Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038571.1 | |
| CAI8038572.1 | |
| CAI8038573.1 | |
| CAI8038574.1 | THREONINE-TRNA LIGASE |
| CAI8038575.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8038584.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8038583.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8038582.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8038581.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8038580.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8038578.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8038579.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8038576.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8038577.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8038585.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8038586.1 | RIBOFLAVIN SYNTHASE ALPHA CHAIN |
| CAI8038588.1 | DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) |
| CAI8038587.1 | DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) |
| CAI8038590.1 | DCTP DEAMINASE |
| CAI8038589.1 | DCTP DEAMINASE |
| CAI8038591.1 | SLR1258 PROTEIN |
| CAI8038592.1 | ACYL-COA DEHYDROGENASE |
| CAI8038593.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8038594.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8038595.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8038596.1 | |
| CAI8038597.1 | |
| CAI8038598.1 | |
| CAI8038599.1 | CATABOLIC 3-DEHYDROQUINASE |
| CAI8038600.1 | |
| CAI8038603.1 | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED |
| CAI8038604.1 | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED |
| CAI8038601.1 | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED |
| CAI8038602.1 | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED |
| CAI8038605.1 | INTEGRAL MEMBRANE EFFLUX PROTEIN-RELATED |
| CAI8038606.1 | CEPHALOSPORIN-C DEACETYLASE |
| CAI8038607.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8038608.1 | PERIPLASMIC PHOSPHATE BINDING COMPONENT OF PHOSPHATE ABC TRANSPORTER |
| CAI8038609.1 | XAA-PRO AMINOPEPTIDASE 3 |
| CAI8038610.1 | ABC-TRANSPORTER METAL-BINDING PROTEIN |
| CAI8038611.1 | 2-OXOGLUTARATE OXIDOREDUCTASE SUBUNIT KORB-RELATED |
| CAI8038612.1 | |
| CAI8038613.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8038614.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8038615.1 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
| CAI8038618.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038617.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038622.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038620.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038619.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
