Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039070.1 | NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG |
| CAI8039072.1 | |
| CAI8039073.1 | SYNTAXIN |
| CAI8039074.1 | CELL DIVISION PROTEIN KINASE |
| CAI8039076.1 | SHIPPO-1-RELATED |
| CAI8039075.1 | |
| CAI8039077.1 | |
| CAI8039078.1 | |
| CAI8039079.1 | CHROMOSOME 1 OPEN READING FRAME 112 |
| CAI8039080.1 | |
| CAI8039081.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8039083.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 |
| CAI8039086.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 |
| CAI8039084.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 |
| CAI8039085.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 |
| CAI8039082.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 |
| CAI8039087.1 | NEGATIVE ELONGATION FACTOR E |
| CAI8039088.1 | UPF0565 PROTEIN C2ORF69 |
| CAI8039089.1 | ZINC FINGER, ZZ DOMAIN CONTAINING 3 |
| CAI8039090.1 | |
| CAI8039092.1 | LD33695P |
| CAI8039091.1 | LD33695P |
| CAI8039093.1 | LD33695P |
| CAI8039094.1 | LD33695P |
| CAI8039095.1 | LD33695P |
| CAI8039096.1 | |
| CAI8039097.1 | |
| CAI8039100.1 | HISTONE-LYSINE N-METHYLTRANSFERASE SMYD |
| CAI8039099.1 | HISTONE-LYSINE N-METHYLTRANSFERASE SMYD |
| CAI8039098.1 | HISTONE-LYSINE N-METHYLTRANSFERASE SMYD |
| CAI8039101.1 | |
| CAI8039105.1 | |
| CAI8039104.1 | HISTONE-LYSINE N-METHYLTRANSFERASE SMYD |
| CAI8039103.1 | |
| CAI8039102.1 | |
| CAI8039107.1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| CAI8039106.1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| CAI8039108.1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| CAI8039109.1 | |
| CAI8039110.1 | UPF0690 PROTEIN C1ORF52 |
| CAI8039114.1 | TELOMERE LENGTH AND SILENCING PROTEIN 1 TLS1 FAMILY MEMBER |
| CAI8039112.1 | TELOMERE LENGTH AND SILENCING PROTEIN 1 TLS1 FAMILY MEMBER |
| CAI8039111.1 | TELOMERE LENGTH AND SILENCING PROTEIN 1 TLS1 FAMILY MEMBER |
| CAI8039113.1 | TELOMERE LENGTH AND SILENCING PROTEIN 1 TLS1 FAMILY MEMBER |
| CAI8039115.1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN |
| CAI8039118.1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN |
| CAI8039117.1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN |
| CAI8039116.1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN |
| CAI8039119.1 | HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) |
| CAI8039120.1 | HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) |
