Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039221.1 | THIOREDOXIN-LIKE PROTEIN 1 |
| CAI8039224.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8039223.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8039222.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8039225.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI8039226.1 | 40S RIBOSOMAL PROTEIN S12 |
| CAI8039227.1 | |
| CAI8039228.1 | FORMYLTETRAHYDROFOLATE DEFORMYLASE |
| CAI8039229.1 | SMALL NUCLEAR RIBONUCLEOPROTEIN |
| CAI8039230.1 | SMALL NUCLEAR RIBONUCLEOPROTEIN |
| CAI8039231.1 | 60S RIBOSOMAL PROTEIN L37 |
| CAI8039232.1 | RIBOSE-5-PHOSPHATE ISOMERASE |
| CAI8039233.1 | RIBOSE-5-PHOSPHATE ISOMERASE |
| CAI8039234.1 | RIBOSE-5-PHOSPHATE ISOMERASE |
| CAI8039235.1 | RIBOSE-5-PHOSPHATE ISOMERASE |
| CAI8039236.1 | ACETATE--COA LIGASE [ADP-FORMING] |
| CAI8039237.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8039238.1 | |
| CAI8039239.1 | GEO12009P1 |
| CAI8039240.1 | GEO12009P1 |
| CAI8039241.1 | ROK (REPRESSOR, ORF, KINASE) FAMILY |
| CAI8039246.1 | CHAPERONIN |
| CAI8039245.1 | CHAPERONIN |
| CAI8039244.1 | CHAPERONIN |
| CAI8039243.1 | CHAPERONIN |
| CAI8039242.1 | CHAPERONIN |
| CAI8039247.1 | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE |
| CAI8039248.1 | |
| CAI8039249.1 | |
| CAI8039250.1 | COBALAMIN BIOSYNTHESIS PROTEIN CBIB |
| CAI8039252.1 | DETHIOBIOTIN SYNTHETASE |
| CAI8039251.1 | DETHIOBIOTIN SYNTHETASE |
| CAI8039253.1 | |
| CAI8039254.1 | |
| CAI8039255.1 | |
| CAI8039256.1 | |
| CAI8039257.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8039258.1 | NICKEL INSERTION PROTEIN-RELATED |
| CAI8039259.1 | - |
| CAI8039260.1 | |
| CAI8039261.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8039262.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE-RELATED |
| CAI8039265.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| CAI8039264.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| CAI8039263.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| CAI8039266.1 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
| CAI8039269.1 | FO SYNTHASE (COFH) |
| CAI8039267.1 | FO SYNTHASE (COFH) |
| CAI8039268.1 | FO SYNTHASE (COFH) |
| CAI8039272.1 | FO SYNTHASE (COFH) |
