Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039375.1 | EXPORTIN 1/5 |
| CAI8039374.1 | EXPORTIN 1/5 |
| CAI8039373.1 | EXPORTIN 1/5 |
| CAI8039372.1 | EXPORTIN 1/5 |
| CAI8039371.1 | EXPORTIN 1/5 |
| CAI8039376.1 | EXPORTIN 1/5 |
| CAI8039377.1 | EXPORTIN 1/5 |
| CAI8039378.1 | EXPORTIN 1/5 |
| CAI8039379.1 | EXPORTIN 1/5 |
| CAI8039380.1 | EXPORTIN 1/5 |
| CAI8039381.1 | EXPORTIN 1/5 |
| CAI8039382.1 | |
| CAI8039383.1 | CYSTEINE-RICH MOTOR NEURON 1 PROTEIN |
| CAI8039384.1 | SH2B ADAPTER PROTEIN |
| CAI8039391.1 | CCAAT DISPLACEMENT PROTEIN-RELATED |
| CAI8039390.1 | CCAAT DISPLACEMENT PROTEIN-RELATED |
| CAI8039389.1 | CCAAT DISPLACEMENT PROTEIN-RELATED |
| CAI8039388.1 | CCAAT DISPLACEMENT PROTEIN-RELATED |
| CAI8039386.1 | CCAAT DISPLACEMENT PROTEIN-RELATED |
| CAI8039387.1 | CCAAT DISPLACEMENT PROTEIN-RELATED |
| CAI8039385.1 | CCAAT DISPLACEMENT PROTEIN-RELATED |
| CAI8039392.1 | |
| CAI8039393.1 | |
| CAI8039394.1 | |
| CAI8039395.1 | |
| CAI8039396.1 | TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 1 |
| CAI8039397.1 | |
| CAI8039398.1 | PREPHENATE DEHYDROGENASE |
| CAI8039399.1 | AROM/DEHYDROQUINATE SYNTHASE |
| CAI8039400.1 | LIPOYL SYNTHASE |
| CAI8039401.1 | IMIDAZOLONEPROPIONASE |
| CAI8039402.1 | |
| CAI8039403.1 | |
| CAI8039404.1 | TRANSAMIDASE |
| CAI8039406.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8039405.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8039407.1 | AMINOMETHYLTRANSFERASE |
| CAI8039408.1 | AMINOMETHYLTRANSFERASE |
| CAI8039409.1 | |
| CAI8039411.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8039410.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8039412.1 | ADP-RIBOSYLGLYCOHYDROLASE |
| CAI8039413.1 | ARCHAEAL-TYPE GLUTAMATE SYNTHASE [NADPH] |
| CAI8039414.1 | TUNGSTEN FORMYLMETHANOFURAN DEHYDROGENASE, SUBUNIT C (FWDC) |
| CAI8039415.1 | METHIONINE--TRNA LIGASE |
| CAI8039416.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8039417.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8039418.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8039419.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8039420.1 | HOMOCITRATE SYNTHASE-RELATED |
