Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039421.1 | THIOL PEROXIDASE |
| CAI8039422.1 | TRANSCRIPTION ELONGATION FACTOR GREA |
| CAI8039423.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8039424.1 | |
| CAI8039425.1 | |
| CAI8039427.1 | |
| CAI8039426.1 | |
| CAI8039428.1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
| CAI8039430.1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
| CAI8039429.1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
| CAI8039431.1 | LD33804P |
| CAI8039432.1 | |
| CAI8039433.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 9 |
| CAI8039434.1 | O-METHYLTRANSFERASE-RELATED |
| CAI8039435.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
| CAI8039436.1 | - |
| CAI8039437.1 | - |
| CAI8039439.1 | |
| CAI8039438.1 | |
| CAI8039440.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8039441.1 | |
| CAI8039442.1 | |
| CAI8039443.1 | |
| CAI8039445.1 | E3 UBIQUITIN-PROTEIN LIGASE TM129 |
| CAI8039446.1 | E3 UBIQUITIN-PROTEIN LIGASE TM129 |
| CAI8039444.1 | E3 UBIQUITIN-PROTEIN LIGASE TM129 |
| CAI8039447.1 | E3 UBIQUITIN-PROTEIN LIGASE TM129 |
| CAI8039448.1 | LD44762P |
| CAI8039450.1 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| CAI8039449.1 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| CAI8039451.1 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| CAI8039452.1 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| CAI8039453.1 | |
| CAI8039456.1 | RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN |
| CAI8039455.1 | RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN |
| CAI8039454.1 | |
| CAI8039458.1 | SPERMATHECAL PHYSIOLOGY VARIANT |
| CAI8039457.1 | SPERMATHECAL PHYSIOLOGY VARIANT |
| CAI8039460.1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| CAI8039459.1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| CAI8039461.1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| CAI8039462.1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| CAI8039463.1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| CAI8039464.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 61 |
| CAI8039465.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 61 |
| CAI8039466.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 61 |
| CAI8039467.1 | RIBOSOMAL PROTEIN L27 |
| CAI8039468.1 | THYMIDINE KINASE |
| CAI8039469.1 | DETERIN |
| CAI8039473.1 |
