Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039571.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8039572.1 | |
| CAI8039573.1 | PROBABLE 2-DEHYDROPANTOATE 2-REDUCTASE |
| CAI8039574.1 | |
| CAI8039575.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8039576.1 | HYDROLASE YCAC-RELATED |
| CAI8039577.1 | |
| CAI8039578.1 | |
| CAI8039579.1 | |
| CAI8039580.1 | |
| CAI8039581.1 | AP ENDONUCLEASE |
| CAI8039582.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8039583.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8039586.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI8039585.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI8039584.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI8039587.1 | AMINOMETHYLTRANSFERASE |
| CAI8039588.1 | TRK SYSTEM POTASSIUM UPTAKE PROTEIN |
| CAI8039589.1 | UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE |
| CAI8039590.1 | |
| CAI8039591.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8039592.1 | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED |
| CAI8039593.1 | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED |
| CAI8039594.1 | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED |
| CAI8039595.1 | GUANYLATE KINASE-RELATED |
| CAI8039596.1 | GUANYLATE KINASE-RELATED |
| CAI8039597.1 | |
| CAI8039598.1 | CELL SHAPE-DETERMINING PROTEIN MREB |
| CAI8039599.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE |
| CAI8039600.1 | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE |
| CAI8039605.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8039604.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8039603.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8039602.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8039601.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8039606.1 | |
| CAI8039607.1 | MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC |
| CAI8039608.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE 2 |
| CAI8039609.1 | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 |
| CAI8039610.1 | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 |
| CAI8039611.1 | |
| CAI8039612.1 | ENOYL-COA HYDRATASE |
| CAI8039613.1 | INNER MEMBRANE PROTEIN YBBJ |
| CAI8039614.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI8039616.1 | LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE |
| CAI8039615.1 | LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE |
| CAI8039617.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8039618.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8039619.1 | PEPTIDASE T |
| CAI8039620.1 | RIBONUCLEASE D |
