Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039671.1 | NADPH NITROREDUCTASE |
| CAI8039672.1 | |
| CAI8039673.1 | |
| CAI8039674.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8039675.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8039676.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8039677.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8039678.1 | SUGAR KINASE |
| CAI8039679.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8039680.1 | |
| CAI8039681.1 | |
| CAI8039682.1 | |
| CAI8039684.1 | PROTEIN SIDEKICK |
| CAI8039683.1 | CYTOKINE RECEPTOR |
| CAI8039685.1 | |
| CAI8039686.1 | |
| CAI8039687.1 | ADHESION G PROTEIN-COUPLED RECEPTOR G7 |
| CAI8039688.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8039689.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8039690.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8039691.1 | OLIGOPEPTIDE/DIPEPTIDE ABC TRANSPORTER, ATPASE SUBUNIT |
| CAI8039692.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8039693.1 | |
| CAI8039694.1 | SOLEUCYL-TRNA SYNTHETASE |
| CAI8039695.1 | SOLEUCYL-TRNA SYNTHETASE |
| CAI8039696.1 | SOLEUCYL-TRNA SYNTHETASE |
| CAI8039697.1 | ALDEHYDE DEHYDROGENASE |
| CAI8039698.1 | TRANSPOSASE |
| CAI8039699.1 | |
| CAI8039700.1 | |
| CAI8039701.1 | |
| CAI8039705.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039703.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039704.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039702.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039706.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039707.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039708.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039709.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039710.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039711.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039712.1 | NEPHRIN |
| CAI8039713.1 | INTERLEUKIN-1 RECEPTOR FAMILY MEMBER |
| CAI8039714.1 | |
| CAI8039715.1 | SPHINGOMYELIN PHOSPHODIESTERASE 4 |
| CAI8039716.1 | |
| CAI8039720.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8039719.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8039721.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8039718.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
