Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039521.1 | |
| CAI8039522.1 | CUB DOMAIN-CONTAINING PROTEIN |
| CAI8039523.1 | |
| CAI8039524.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8039525.1 | DYNACTIN SUBUNIT P25 |
| CAI8039526.1 | ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE |
| CAI8039527.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) |
| CAI8039528.1 | COLANIC BIOSYNTHESIS UDP-GLUCOSE LIPID CARRIER TRANSFERASE |
| CAI8039529.1 | |
| CAI8039530.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8039531.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8039532.1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| CAI8039533.1 | |
| CAI8039534.1 | |
| CAI8039538.1 | |
| CAI8039537.1 | |
| CAI8039536.1 | |
| CAI8039535.1 | |
| CAI8039539.1 | |
| CAI8039540.1 | |
| CAI8039541.1 | |
| CAI8039542.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8039543.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8039544.1 | PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED |
| CAI8039545.1 | 2-OXOGLUTARATE OXIDOREDUCTASE SUBUNIT KORB-RELATED |
| CAI8039546.1 | |
| CAI8039547.1 | 5-METHYLCYTOSINE-SPECIFIC RESTRICTION ENZYME B |
| CAI8039548.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8039549.1 | |
| CAI8039550.1 | IRON-SULFUR DOMAIN CONTAINING PROTEIN |
| CAI8039551.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8039552.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8039553.1 | |
| CAI8039554.1 | TREHALASE |
| CAI8039555.1 | BLR5969 PROTEIN |
| CAI8039556.1 | CHLOROPHYLL SYNTHASE |
| CAI8039558.1 | ALANINE RACEMASE |
| CAI8039557.1 | ALANINE RACEMASE |
| CAI8039559.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
| CAI8039560.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
| CAI8039561.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
| CAI8039562.1 | VON HIPPEL-LINDAU PROTEIN |
| CAI8039563.1 | ATP SYNTHASE SUBUNIT A, CHLOROPLASTIC |
| CAI8039564.1 | |
| CAI8039565.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8039566.1 | ATP SYNTHASE GAMMA CHAIN |
| CAI8039567.1 | ATP SYNTHASE |
| CAI8039569.1 | REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX |
| CAI8039568.1 | REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX |
| CAI8039570.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
