Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039271.1 | FO SYNTHASE (COFH) |
| CAI8039270.1 | FO SYNTHASE (COFH) |
| CAI8039273.1 | GLYCOSYLTRANSFERASE |
| CAI8039274.1 | |
| CAI8039275.1 | THIOREDOXIN-DEPENDENT PEROXIDE REDUCTASE |
| CAI8039276.1 | |
| CAI8039277.1 | |
| CAI8039278.1 | |
| CAI8039279.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8039280.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8039281.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8039282.1 | FO SYNTHASE (COFH) |
| CAI8039283.1 | FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 1 |
| CAI8039284.1 | SHIKIMATE DEHYDROGENASE |
| CAI8039285.1 | AROM/DEHYDROQUINATE SYNTHASE |
| CAI8039286.1 | CHORISMATE SYNTHASE |
| CAI8039289.1 | CHORISMATE SYNTHASE |
| CAI8039288.1 | CHORISMATE SYNTHASE |
| CAI8039287.1 | CHORISMATE SYNTHASE |
| CAI8039290.1 | CHORISMATE SYNTHASE |
| CAI8039291.1 | CHORISMATE SYNTHASE |
| CAI8039292.1 | CHORISMATE SYNTHASE |
| CAI8039293.1 | CHORISMATE SYNTHASE |
| CAI8039294.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8039295.1 | PREPHENATE DEHYDROGENASE |
| CAI8039299.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8039298.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8039297.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8039296.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8039300.1 | PHOSPHOMETHYLPYRIMIDINE KINASE |
| CAI8039301.1 | TRANSCRIPTIONAL REGULATOR PROTEIN-LIKE PROTEIN |
| CAI8039302.1 | GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
| CAI8039303.1 | |
| CAI8039304.1 | |
| CAI8039305.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8039306.1 | ATP-DEPENDENT HELICASE HRQ1 |
| CAI8039307.1 | |
| CAI8039308.1 | TRANSCRIPTIONAL REGULATOR YQJI |
| CAI8039309.1 | |
| CAI8039310.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8039311.1 | |
| CAI8039312.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8039313.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8039314.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8039315.1 | RIBOSOMAL PROTEIN S7 |
| CAI8039317.1 | RIBOSOMAL PROTEIN S7 |
| CAI8039316.1 | RIBOSOMAL PROTEIN S7 |
| CAI8039318.1 | RIBOSOMAL PROTEIN S7 |
| CAI8039319.1 | FORMATE TRANSPORTER-RELATED |
| CAI8039320.1 | CYANATE HYDRATASE |
