Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039122.1 | CENTAURIN/ARF |
| CAI8039123.1 | CENTAURIN/ARF |
| CAI8039121.1 | CENTAURIN/ARF |
| CAI8039126.1 | CENTAURIN/ARF |
| CAI8039125.1 | CENTAURIN/ARF |
| CAI8039124.1 | CENTAURIN/ARF |
| CAI8039127.1 | CENTAURIN/ARF |
| CAI8039128.1 | HAMARTIN |
| CAI8039129.1 | VACUOLAR ATP SYNTHASE SUBUNIT G |
| CAI8039132.1 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
| CAI8039133.1 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
| CAI8039131.1 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
| CAI8039130.1 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
| CAI8039134.1 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
| CAI8039135.1 | RIBOSOMAL PROTEIN L5-RELATED |
| CAI8039136.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
| CAI8039137.1 | TRNA (GUANINE-9-) METHYLTRANSFERASE |
| CAI8039144.1 | LARGE PROLINE-RICH PROTEIN BAG6 |
| CAI8039140.1 | LARGE PROLINE-RICH PROTEIN BAG6 |
| CAI8039142.1 | LARGE PROLINE-RICH PROTEIN BAG6 |
| CAI8039139.1 | |
| CAI8039138.1 | LARGE PROLINE-RICH PROTEIN BAG6 |
| CAI8039141.1 | LARGE PROLINE-RICH PROTEIN BAG6 |
| CAI8039143.1 | RNA-BINDING PROTEIN |
| CAI8039145.1 | DIMETHYLARGININE DIMETHYLAMINOHYDROLASE |
| CAI8039146.1 | NEGATIVE ELONGATION FACTOR COMPLEX MEMBER B |
| CAI8039149.1 | |
| CAI8039147.1 | |
| CAI8039148.1 | |
| CAI8039150.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8039151.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8039152.1 | |
| CAI8039153.1 | TPR DOMAIN-CONTAINING PROTEIN |
| CAI8039158.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039157.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039156.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039155.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039154.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039160.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039159.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039161.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039162.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039163.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039164.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8039165.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8039166.1 | |
| CAI8039167.1 | |
| CAI8039168.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8039169.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8039170.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
