Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039821.1 | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039822.1 | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039823.1 | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039825.1 | TRYPTOPHAN BIOSYNTHESIS PROTEIN |
| CAI8039824.1 | TRYPTOPHAN BIOSYNTHESIS PROTEIN |
| CAI8039826.1 | UNCHARACTERIZED |
| CAI8039827.1 | CELL DIVISION CYCLE 16,23,27 |
| CAI8039828.1 | SUGAR KINASE |
| CAI8039829.1 | SUGAR KINASE |
| CAI8039830.1 | NA+/H+ ANTIPORTER-RELATED |
| CAI8039831.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8039832.1 | |
| CAI8039833.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8039834.1 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| CAI8039835.1 | - |
| CAI8039836.1 | BILIVERDIN REDUCTASE A |
| CAI8039837.1 | |
| CAI8039838.1 | PEPTIDASE-RELATED |
| CAI8039839.1 | HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039840.1 | |
| CAI8039841.1 | ALDO/KETO REDUCTASE |
| CAI8039842.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8039843.1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
| CAI8039845.1 | P-TYPE CATION-TRANSPORTING ATPASE |
| CAI8039844.1 | P-TYPE CATION-TRANSPORTING ATPASE |
| CAI8039846.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| CAI8039847.1 | |
| CAI8039848.1 | |
| CAI8039849.1 | UPF0045 PROTEIN ECM15 |
| CAI8039850.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8039851.1 | ALPHA-L-FUCOSIDASE 2 |
| CAI8039852.1 | |
| CAI8039853.1 | |
| CAI8039854.1 | |
| CAI8039855.1 | BETA-FRUCTOSIDASE |
| CAI8039856.1 | EXOINULINASE INUD (AFU_ORTHOLOGUE AFUA_5G00480) |
| CAI8039857.1 | BETA-FRUCTOSIDASE |
| CAI8039858.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8039861.1 | FLAGELLAR RADIAL SPOKE PROTEIN 3 |
| CAI8039860.1 | FLAGELLAR RADIAL SPOKE PROTEIN 3 |
| CAI8039859.1 | FLAGELLAR RADIAL SPOKE PROTEIN 3 |
| CAI8039862.1 | PURPLE ACID PHOSPHATASE-RELATED |
| CAI8039864.1 | NURIM |
| CAI8039863.1 | |
| CAI8039865.1 | |
| CAI8039866.1 | |
| CAI8039869.1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
| CAI8039870.1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
| CAI8039868.1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
| CAI8039867.1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
