Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039872.1 | |
| CAI8039871.1 | |
| CAI8039873.1 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
| CAI8039874.1 | PEFLIN |
| CAI8039878.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8039877.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8039876.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8039875.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8039879.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8039880.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8039881.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8039882.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8039883.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8039884.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8039885.1 | UREASE |
| CAI8039886.1 | UREASE |
| CAI8039887.1 | UREASE |
| CAI8039888.1 | UREASE |
| CAI8039889.1 | UREASE |
| CAI8039890.1 | UREASE ACCESSORY PROTEIN G |
| CAI8039891.1 | UREASE ACCESSORY PROTEIN G |
| CAI8039892.1 | ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED |
| CAI8039893.1 | SLR1406 PROTEIN |
| CAI8039894.1 | EPOXIDE HYDROLASE |
| CAI8039895.1 | |
| CAI8039896.1 | |
| CAI8039897.1 | ACYL-COA DEHYDROGENASE |
| CAI8039898.1 | |
| CAI8039899.1 | ACYL-COA DEHYDROGENASE |
| CAI8039900.1 | RIBONUCLEASE VAPC3 |
| CAI8039901.1 | AAA FAMILY ATPASE |
| CAI8039902.1 | SLR1927 PROTEIN-RELATED |
| CAI8039903.1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
| CAI8039904.1 | |
| CAI8039905.1 | |
| CAI8039906.1 | - |
| CAI8039907.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8039908.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8039909.1 | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE |
| CAI8039910.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8039911.1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
| CAI8039912.1 | |
| CAI8039913.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
| CAI8039914.1 | SLL0198 PROTEIN-RELATED |
| CAI8039915.1 | COBALAMIN BIOSYNTHESIS PROTEIN CBIB |
| CAI8039916.1 | ADENOSYLCOBINAMIDE-GDP RIBAZOLETRANSFERASE |
| CAI8039921.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039920.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039919.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039922.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
