Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039918.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039917.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039923.1 | |
| CAI8039924.1 | CORRINOID ADENOSYLTRANSFERASE |
| CAI8039926.1 | COBYRINATE A,C-DIAMIDE SYNTHASE |
| CAI8039925.1 | COBYRINATE A,C-DIAMIDE SYNTHASE |
| CAI8039927.1 | |
| CAI8039928.1 | L-ASPARAGINASE |
| CAI8039929.1 | |
| CAI8039930.1 | METALLOPROTEASE M41 FTSH |
| CAI8039931.1 | |
| CAI8039932.1 | MODULATOR OF FTSH PROTEASE HFLC |
| CAI8039933.1 | HYDROXYACYLGLUTATHIONE HYDROLASE GLOC |
| CAI8039934.1 | AMMONIUM TRANSPORTER MEP2 |
| CAI8039935.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8039936.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8039937.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8039938.1 | QUEUOSINE PRECURSOR TRANSPORTER-RELATED |
| CAI8039939.1 | LYSOPHOSPHOLIPASE-RELATED |
| CAI8039940.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8039941.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8039942.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8039943.1 | SI:CH73-390P7.2 |
| CAI8039944.1 | ACYL-MALONYL CONDENSING ENZYME-RELATED |
| CAI8039945.1 | LEUCINE-RESPONSIVE REGULATORY PROTEIN |
| CAI8039946.1 | |
| CAI8039947.1 | ACONITATE HYDRATASE B |
| CAI8039948.1 | ACONITATE HYDRATASE B |
| CAI8039949.1 | ACONITATE HYDRATASE B |
| CAI8039950.1 | 30S RIBOSOMAL PROTEIN S1 |
| CAI8039951.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8039952.1 | |
| CAI8039953.1 | RIBOSOMAL PROTEIN L27 |
| CAI8039954.1 | 50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC |
| CAI8039955.1 | |
| CAI8039956.1 | MEMBRANE PROTEIN-RELATED |
| CAI8039957.1 | |
| CAI8039958.1 | |
| CAI8039959.1 | |
| CAI8039960.1 | |
| CAI8039961.1 | GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4 |
| CAI8039962.1 | DNA MISMATCH REPAIR PROTEINS MUTS FAMILY DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8039963.1 | |
| CAI8039964.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| CAI8039965.1 | NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039966.1 | NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039967.1 | NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039968.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039969.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039978.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
