Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039976.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039977.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039975.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039970.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039973.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039971.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039972.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039974.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8039979.1 | |
| CAI8039980.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8039981.1 | |
| CAI8039982.1 | |
| CAI8039983.1 | |
| CAI8039984.1 | |
| CAI8039985.1 | |
| CAI8039986.1 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
| CAI8039987.1 | |
| CAI8039990.1 | WD40 REPEAT PROTEIN 12, 37 |
| CAI8039989.1 | WD40 REPEAT PROTEIN 12, 37 |
| CAI8039988.1 | WD40 REPEAT PROTEIN 12, 37 |
| CAI8039991.1 | WD40 REPEAT PROTEIN 12, 37 |
| CAI8039992.1 | |
| CAI8039993.1 | EXTRA SPINDLE POLES 1-RELATED |
| CAI8039994.1 | |
| CAI8039995.1 | |
| CAI8039996.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8039997.1 | PROTEIN SMF |
| CAI8039998.1 | |
| CAI8039999.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8040000.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8040001.1 | UNCHARACTERIZED PROTEIN YVCK-RELATED |
| CAI8040002.1 | UNCHARACTERIZED PROTEIN YVCK-RELATED |
| CAI8040003.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8040005.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI8040004.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI8040006.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI8040007.1 | THIOSULFATE SULFURTRANSFERASE |
| CAI8040008.1 | METALLOPROTEASE M41 FTSH |
| CAI8040009.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8040010.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8040011.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8040012.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8040013.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8040014.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8040017.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8040015.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8040016.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8040018.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8040021.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8040020.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
