Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040166.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8040167.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8040165.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8040164.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8040175.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8040176.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8040177.1 | COLLAGEN ALPHA |
| CAI8040178.1 | CYTOKINE RECEPTOR |
| CAI8040179.1 | ALDO/KETO REDUCTASE |
| CAI8040180.1 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
| CAI8040181.1 | SPERM ASSOCIATED ANTIGEN 7 |
| CAI8040182.1 | ZGC:194242 |
| CAI8040183.1 | GUANYLATE BINDING PROTEIN |
| CAI8040184.1 | PROPANEDIOL UTILIZATION PROTEIN PDUA |
| CAI8040185.1 | PROPANEDIOL UTILIZATION PROTEIN PDUA |
| CAI8040186.1 | PHOSPHATE PROPANOYLTRANSFERASE |
| CAI8040187.1 | |
| CAI8040188.1 | |
| CAI8040189.1 | |
| CAI8040190.1 | PROTEIN TOLQ |
| CAI8040191.1 | EXBD MEMBRANE COMPONENT OF PMF-DRIVEN MACROMOLECULE IMPORT SYSTEM |
| CAI8040192.1 | FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE |
| CAI8040193.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8040194.1 | PROTEIN TOLB HOMOLOG |
| CAI8040195.1 | |
| CAI8040196.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8040197.1 | |
| CAI8040198.1 | ADENOSYLHOMOCYSTEINASE |
| CAI8040199.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8040200.1 | 30S RIBOSOMAL PROTEIN S1 |
| CAI8040201.1 | |
| CAI8040202.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8040203.1 | |
| CAI8040204.1 | FERREDOXIN-RELATED |
| CAI8040205.1 | L-ORNITHINE N(5)-MONOOXYGENASE-RELATED |
| CAI8040206.1 | L-ORNITHINE N(5)-MONOOXYGENASE-RELATED |
| CAI8040207.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8040210.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8040209.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8040208.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8040211.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8040212.1 | GTPASE DER |
| CAI8040213.1 | GTPASE DER |
| CAI8040214.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8040219.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8040218.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8040217.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8040216.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8040215.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8040220.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
