Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040471.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| CAI8040473.1 | FLAVIN MONOAMINE OXIDASE |
| CAI8040472.1 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
| CAI8040474.1 | |
| CAI8040475.1 | |
| CAI8040476.1 | |
| CAI8040477.1 | |
| CAI8040478.1 | |
| CAI8040481.1 | FURRY-RELATED |
| CAI8040480.1 | FURRY-RELATED |
| CAI8040482.1 | FURRY-RELATED |
| CAI8040479.1 | FURRY-RELATED |
| CAI8040483.1 | FURRY-RELATED |
| CAI8040484.1 | - |
| CAI8040485.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8040486.1 | |
| CAI8040491.1 | CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC |
| CAI8040490.1 | CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC |
| CAI8040489.1 | CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC |
| CAI8040488.1 | CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC |
| CAI8040487.1 | |
| CAI8040492.1 | |
| CAI8040493.1 | UNCHARACTERIZED |
| CAI8040494.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE |
| CAI8040495.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8040496.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8040497.1 | |
| CAI8040498.1 | |
| CAI8040499.1 | |
| CAI8040501.1 | FLAVIN PRENYLTRANSFERASE |
| CAI8040500.1 | FLAVIN PRENYLTRANSFERASE |
| CAI8040502.1 | FO SYNTHASE (COFH) |
| CAI8040503.1 | FO SYNTHASE (COFH) |
| CAI8040504.1 | TRNA(ILE)-LYSIDINE SYNTHASE-RELATED |
| CAI8040505.1 | |
| CAI8040509.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8040510.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8040511.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8040508.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8040506.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8040507.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8040513.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8040512.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8040514.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8040515.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8040516.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8040517.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8040518.1 | |
| CAI8040519.1 | METHYLCOBAMIDE:COM METHYLTRANSFERASE MTBA |
| CAI8040520.1 | METHIONINE SYNTHASE |
