Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040671.1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| CAI8040668.1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| CAI8040669.1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| CAI8040676.1 | LD30288P |
| CAI8040675.1 | LD30288P |
| CAI8040674.1 | LD30288P |
| CAI8040677.1 | LD30288P |
| CAI8040678.1 | |
| CAI8040679.1 | COLLAGEN ALPHA |
| CAI8040680.1 | ENOYL-COA HYDRATASE |
| CAI8040682.1 | ENOYL-COA HYDRATASE |
| CAI8040681.1 | ENOYL-COA HYDRATASE |
| CAI8040684.1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| CAI8040683.1 | ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED |
| CAI8040685.1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| CAI8040688.1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| CAI8040686.1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| CAI8040687.1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| CAI8040689.1 | UNCHARACTERIZED |
| CAI8040690.1 | |
| CAI8040691.1 | |
| CAI8040692.1 | |
| CAI8040694.1 | PROTEIN DR1 |
| CAI8040693.1 | PROTEIN DR1 |
| CAI8040696.1 | |
| CAI8040695.1 | |
| CAI8040697.1 | SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN |
| CAI8040698.1 | |
| CAI8040699.1 | |
| CAI8040700.1 | SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN |
| CAI8040703.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8040704.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8040702.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8040701.1 | |
| CAI8040712.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040713.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040711.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040710.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040709.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040708.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040707.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040705.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040706.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040714.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040715.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040716.1 | CATION-TRANSPORTING ATPASE-RELATED |
| CAI8040719.1 | 1,4-ALPHA-GLUCAN-BRANCHING ENZYME |
| CAI8040718.1 | 1,4-ALPHA-GLUCAN-BRANCHING ENZYME |
| CAI8040717.1 | 1,4-ALPHA-GLUCAN-BRANCHING ENZYME |
| CAI8040721.1 | 1,4-ALPHA-GLUCAN-BRANCHING ENZYME |
