Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040771.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8040772.1 | |
| CAI8040773.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8040774.1 | 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED |
| CAI8040775.1 | |
| CAI8040776.1 | |
| CAI8040777.1 | AMIDOHYDROLASE |
| CAI8040778.1 | ATP7, ISOFORM B |
| CAI8040779.1 | ATP7, ISOFORM B |
| CAI8040780.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8040782.1 | FRINGE-RELATED |
| CAI8040781.1 | FRINGE-RELATED |
| CAI8040783.1 | FRINGE-RELATED |
| CAI8040784.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 29 |
| CAI8040787.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 29 |
| CAI8040786.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 29 |
| CAI8040785.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 29 |
| CAI8040788.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040789.1 | |
| CAI8040790.1 | |
| CAI8040791.1 | |
| CAI8040793.1 | |
| CAI8040792.1 | |
| CAI8040796.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040795.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040794.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040797.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8040798.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8040799.1 | BASIGIN RELATED |
| CAI8040800.1 | NEPHRIN |
| CAI8040801.1 | |
| CAI8040802.1 | |
| CAI8040803.1 | |
| CAI8040805.1 | |
| CAI8040804.1 | |
| CAI8040806.1 | LIPASE MATURATION FACTOR |
| CAI8040807.1 | LIPASE MATURATION FACTOR |
| CAI8040808.1 | |
| CAI8040809.1 | |
| CAI8040813.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8040812.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8040811.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8040810.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8040815.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8040814.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8040816.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8040817.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8040818.1 | |
| CAI8040819.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| CAI8040820.1 |
