Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040921.1 | ALPHA-GLUCOSIDASE |
| CAI8040922.1 | ALPHA-GLUCOSIDASE |
| CAI8040923.1 | ALPHA-GLUCOSIDASE |
| CAI8040924.1 | ALPHA-GLUCOSIDASE |
| CAI8040927.1 | NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1 |
| CAI8040926.1 | NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1 |
| CAI8040925.1 | NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1 |
| CAI8040928.1 | |
| CAI8040929.1 | NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1 |
| CAI8040930.1 | UNCHARACTERIZED |
| CAI8040931.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED |
| CAI8040932.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED |
| CAI8040933.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED |
| CAI8040934.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED |
| CAI8040935.1 | 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN PDGF-ASSOCIATED PROTEIN |
| CAI8040936.1 | |
| CAI8040937.1 | |
| CAI8040938.1 | |
| CAI8040939.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8040940.1 | |
| CAI8040941.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8040942.1 | |
| CAI8040946.1 | |
| CAI8040945.1 | INTERLEUKIN-27 SUBUNIT BETA |
| CAI8040944.1 | |
| CAI8040943.1 | INTERLEUKIN-27 SUBUNIT BETA |
| CAI8040948.1 | |
| CAI8040947.1 | |
| CAI8040950.1 | |
| CAI8040949.1 | |
| CAI8040951.1 | |
| CAI8040955.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8040954.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8040953.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8040952.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8040956.1 | |
| CAI8040957.1 | |
| CAI8040958.1 | |
| CAI8040959.1 | |
| CAI8040961.1 | PROTEIN ARGININE N-METHYLTRANSFERASE 5 |
| CAI8040962.1 | PROTEIN ARGININE N-METHYLTRANSFERASE 5 |
| CAI8040960.1 | PROTEIN ARGININE N-METHYLTRANSFERASE 5 |
| CAI8040965.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8040966.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8040964.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8040963.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8040967.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8040969.1 | INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED |
| CAI8040968.1 | INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED |
| CAI8040970.1 | SPARC OSTEONECTIN |
