Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041025.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8041021.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8041022.1 | |
| CAI8041023.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8041024.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8041026.1 | |
| CAI8041027.1 | |
| CAI8041028.1 | |
| CAI8041029.1 | 60S ACIDIC RIBOSOMAL PROTEIN P1 |
| CAI8041030.1 | 60S ACIDIC RIBOSOMAL PROTEIN P1 |
| CAI8041031.1 | F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED |
| CAI8041032.1 | U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN |
| CAI8041033.1 | 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA |
| CAI8041034.1 | PEPTIDASE T |
| CAI8041035.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI8041036.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8041037.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8041038.1 | PYRUVATE KINASE |
| CAI8041040.1 | GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN |
| CAI8041039.1 | GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN |
| CAI8041041.1 | SLL0198 PROTEIN-RELATED |
| CAI8041042.1 | FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE |
| CAI8041044.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI8041043.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI8041045.1 | |
| CAI8041046.1 | LD33804P |
| CAI8041047.1 | NADH-UBIQUINONE OXIDOREDUCTASE B12 SUBUNIT |
| CAI8041048.1 | GLUTATHIONE S-TRANSFERASE |
| CAI8041049.1 | |
| CAI8041050.1 | |
| CAI8041051.1 | |
| CAI8041052.1 | |
| CAI8041054.1 | |
| CAI8041053.1 | |
| CAI8041055.1 | |
| CAI8041056.1 | PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4 |
| CAI8041057.1 | PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4 |
| CAI8041058.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8041059.1 | |
| CAI8041061.1 | OS05G0300700 PROTEIN |
| CAI8041060.1 | OS05G0300700 PROTEIN |
| CAI8041062.1 | |
| CAI8041067.1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
| CAI8041068.1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
| CAI8041064.1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
| CAI8041065.1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
| CAI8041066.1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
| CAI8041063.1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
| CAI8041069.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8041070.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
