Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040720.1 | 1,4-ALPHA-GLUCAN-BRANCHING ENZYME |
| CAI8040723.1 | |
| CAI8040722.1 | |
| CAI8040726.1 | AP COMPLEX SUBUNIT MU |
| CAI8040725.1 | AP COMPLEX SUBUNIT MU |
| CAI8040724.1 | |
| CAI8040727.1 | AP COMPLEX SUBUNIT MU |
| CAI8040728.1 | AP COMPLEX SUBUNIT MU |
| CAI8040736.1 | SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG |
| CAI8040733.1 | SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG |
| CAI8040734.1 | SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG |
| CAI8040730.1 | SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG |
| CAI8040731.1 | SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG |
| CAI8040735.1 | SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG |
| CAI8040729.1 | SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG |
| CAI8040732.1 | SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG |
| CAI8040737.1 | |
| CAI8040741.1 | INVERTED FORMIN-2 |
| CAI8040740.1 | INVERTED FORMIN-2 |
| CAI8040738.1 | |
| CAI8040739.1 | |
| CAI8040742.1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
| CAI8040744.1 | URIDINE PHOSPHORYLASE |
| CAI8040743.1 | URIDINE PHOSPHORYLASE |
| CAI8040745.1 | CYSTATIN FAMILY MEMBER |
| CAI8040746.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 |
| CAI8040747.1 | KELCH PROTEIN |
| CAI8040749.1 | |
| CAI8040748.1 | |
| CAI8040750.1 | JNK/SAPK-ASSOCIATED PROTEIN |
| CAI8040751.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8040752.1 | |
| CAI8040753.1 | |
| CAI8040754.1 | SERINE/THREONINE PROTEIN KINASE |
| CAI8040755.1 | FRIZZLED |
| CAI8040758.1 | - |
| CAI8040757.1 | - |
| CAI8040756.1 | - |
| CAI8040759.1 | - |
| CAI8040760.1 | - |
| CAI8040762.1 | |
| CAI8040761.1 | |
| CAI8040763.1 | |
| CAI8040764.1 | |
| CAI8040765.1 | |
| CAI8040766.1 | |
| CAI8040767.1 | |
| CAI8040768.1 | |
| CAI8040769.1 | |
| CAI8040770.1 | SERINE-THREONINE PROTEIN KINASE |
