Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041071.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8041072.1 | |
| CAI8041073.1 | |
| CAI8041074.1 | FRINGE-RELATED |
| CAI8041076.1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN |
| CAI8041075.1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN |
| CAI8041077.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I |
| CAI8041078.1 | BACTERIOFERRITIN |
| CAI8041079.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8041080.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8041081.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8041082.1 | UDP-GLUCOSE 6-DEHYDROGENASE TUAD |
| CAI8041083.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8041084.1 | IRON (METAL) DEPENDENT REPRESSOR, DTXR FAMILY |
| CAI8041086.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8041085.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8041094.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8041093.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8041092.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8041088.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8041089.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8041090.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8041087.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8041091.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8041095.1 | |
| CAI8041096.1 | |
| CAI8041097.1 | |
| CAI8041098.1 | |
| CAI8041099.1 | |
| CAI8041100.1 | |
| CAI8041101.1 | |
| CAI8041102.1 | |
| CAI8041103.1 | |
| CAI8041104.1 | PHP DOMAIN PROTEIN |
| CAI8041105.1 | |
| CAI8041106.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8041107.1 | POLYSACCHARIDE DEACETYLASE-RELATED |
| CAI8041108.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8041109.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8041110.1 | SLR1870 PROTEIN |
| CAI8041111.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8041112.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8041113.1 | |
| CAI8041114.1 | THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC |
| CAI8041115.1 | AMINOTRANSFERASE CLASS V |
| CAI8041117.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
| CAI8041116.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
| CAI8041118.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
| CAI8041119.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
| CAI8041120.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
