About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8041221.1
CAI8041222.1
CAI8041223.1NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED
CAI8041224.1PROTEIN-GLUTAMATE METHYLESTERASE/PROTEIN-GLUTAMINE GLUTAMINASE
CAI8041226.1DYMECLIN
CAI8041225.1
CAI8041227.1DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG
CAI8041228.1WINS1, 2 PROTEIN
CAI8041229.1
CAI8041230.1TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEX
CAI8041231.1SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED
CAI8041232.1DYNACTIN SUBUNIT P25
CAI8041234.1BEIGE/BEACH-RELATED
CAI8041235.1BEIGE/BEACH-RELATED
CAI8041236.1BEIGE/BEACH-RELATED
CAI8041233.1BEIGE/BEACH-RELATED
CAI8041239.1METALLOPROTEASE
CAI8041238.1METALLOPROTEASE
CAI8041237.1METALLOPROTEASE
CAI8041240.1METALLOPROTEASE
CAI8041241.1METALLOPROTEASE
CAI8041242.1METALLOPROTEASE
CAI8041244.1ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
CAI8041243.1PROTEASOME SUBUNIT ALPHA/BETA
CAI8041245.1ANKYRIN REPEAT CONTAINING
CAI8041246.1ANKYRIN REPEAT CONTAINING
CAI8041248.1RAB FAMILY
CAI8041247.1RAB FAMILY
CAI8041249.1RAS-RELATED PROTEIN RAB
CAI8041252.1FACIOGENITAL DYSPLASIA PROTEIN
CAI8041251.1FACIOGENITAL DYSPLASIA PROTEIN
CAI8041250.1ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN
CAI8041253.1FACIOGENITAL DYSPLASIA PROTEIN
CAI8041254.1PROTEIN SIDEKICK
CAI8041258.1E3 UBIQUITIN-PROTEIN LIGASE RAD18
CAI8041257.1E3 UBIQUITIN-PROTEIN LIGASE RAD18
CAI8041256.1
CAI8041255.1
CAI8041260.1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17
CAI8041259.1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17
CAI8041261.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
CAI8041263.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
CAI8041262.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
CAI8041265.1MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED
CAI8041266.1MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED
CAI8041264.1MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED
CAI8041267.1TETRATRICOPEPTIDE REPEAT PROTEIN 14
CAI8041268.1
CAI8041269.1
CAI8041270.1LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1
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