Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041318.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8041322.1 | TWO-COMPONENT RESPONSE REGULATOR |
| CAI8041327.1 | METALLOPROTEASE M41 FTSH |
| CAI8041326.1 | METALLOPROTEASE M41 FTSH |
| CAI8041325.1 | METALLOPROTEASE M41 FTSH |
| CAI8041323.1 | METALLOPROTEASE M41 FTSH |
| CAI8041324.1 | METALLOPROTEASE M41 FTSH |
| CAI8041328.1 | METALLOPROTEASE M41 FTSH |
| CAI8041329.1 | THIOSULFATE SULFURTRANSFERASE |
| CAI8041330.1 | AMMONIUM TRANSPORTER |
| CAI8041331.1 | GLUTAMINE SYNTHETASE |
| CAI8041332.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI8041333.1 | |
| CAI8041334.1 | |
| CAI8041335.1 | UNCHARACTERIZED PROTEIN YVCK-RELATED |
| CAI8041336.1 | |
| CAI8041337.1 | CONSERVED EXPRESSED OXIDOREDUCTASE (EUROFUNG) |
| CAI8041338.1 | TRANSAMIDASE |
| CAI8041339.1 | TRANSAMIDASE |
| CAI8041340.1 | F-BOX ONLY PROTEIN 22 |
| CAI8041341.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8041342.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8041343.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8041344.1 | SYNAPTOTAGMIN |
| CAI8041345.1 | |
| CAI8041346.1 | UNCHARACTERIZED |
| CAI8041348.1 | TRANSAMIDASE |
| CAI8041347.1 | TRANSAMIDASE |
| CAI8041349.1 | TRANSAMIDASE |
| CAI8041350.1 | TRANSAMIDASE |
| CAI8041351.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8041352.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8041353.1 | |
| CAI8041354.1 | |
| CAI8041355.1 | |
| CAI8041356.1 | |
| CAI8041357.1 | |
| CAI8041358.1 | |
| CAI8041359.1 | |
| CAI8041360.1 | MYOTROPHIN |
| CAI8041361.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8041363.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8041362.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8041364.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8041365.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8041376.1 | NULP1-RELATED |
| CAI8041377.1 | NULP1-RELATED |
| CAI8041378.1 | NULP1-RELATED |
| CAI8041375.1 | NULP1-RELATED |
| CAI8041374.1 | NULP1-RELATED |
