About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 874 875 876 877 878 879 880 881 882 883 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8014951.1SUCCINYL-COA SYNTHETASE BETA CHAIN
CAI8014952.1SUCCINYL-COA LIGASE SUBUNIT ALPHA
CAI8014953.1SUCCINYL-COA LIGASE SUBUNIT ALPHA
CAI8014954.1MOLYBDENUM COFACTOR BIOSYNTHESIS
CAI8014955.1MOLYBDENUM COFACTOR BIOSYNTHESIS
CAI8014956.1TRANSPORT ATP-BINDING PROTEIN
CAI8014957.1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
CAI8014958.1OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC
CAI8014959.1PHOSPHOADENOSINE PHOSPHOSULFATE REDUCTASE
CAI8014960.1TRANSLATION FACTOR
CAI8014961.1ACETYLTRANSFERASE
CAI8014962.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
CAI8014963.1ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER
CAI8014964.1HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER
CAI8014965.1-
CAI8014966.1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
CAI8014967.1MOLYBDOPTERIN SYNTHASE SULFUR CARRIER SUBUNIT
CAI8014968.1MOLYBDOPTERIN SYNTHASE RELATED
CAI8014969.1DNA REPAIR PROTEIN RADA
CAI8014970.1ATP-DEPENDENT CLP PROTEASE
TOP