Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041468.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| CAI8041467.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| CAI8041466.1 | |
| CAI8041474.1 | |
| CAI8041476.1 | 5-OXOPROLINASE RELATED |
| CAI8041475.1 | 5-OXOPROLINASE RELATED |
| CAI8041477.1 | 5-OXOPROLINASE RELATED |
| CAI8041478.1 | UFM1-SPECIFIC PROTEASE 2 |
| CAI8041479.1 | |
| CAI8041480.1 | UFM1-SPECIFIC PROTEASE 2 |
| CAI8041482.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8041481.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8041483.1 | PROTEIN HAPLESS 2 |
| CAI8041484.1 | PROTEIN HAPLESS 2 |
| CAI8041485.1 | |
| CAI8041487.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17 |
| CAI8041488.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17 |
| CAI8041486.1 | |
| CAI8041489.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17 |
| CAI8041490.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17 |
| CAI8041491.1 | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED |
| CAI8041492.1 | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED |
| CAI8041493.1 | |
| CAI8041497.1 | |
| CAI8041496.1 | |
| CAI8041495.1 | |
| CAI8041494.1 | |
| CAI8041498.1 | |
| CAI8041499.1 | MITOTIC-SPINDLE ORGANIZING PROTEIN 1 |
| CAI8041500.1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
| CAI8041501.1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
| CAI8041502.1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
| CAI8041503.1 | BRISC AND BRCA1-A COMPLEX MEMBER 2 |
| CAI8041504.1 | BRISC AND BRCA1-A COMPLEX MEMBER 2 |
| CAI8041505.1 | BRISC AND BRCA1-A COMPLEX MEMBER 2 |
| CAI8041509.1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
| CAI8041507.1 | |
| CAI8041506.1 | |
| CAI8041508.1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
| CAI8041512.1 | SOLUBLE NSF ATTACHMENT PROTEIN SNAP |
| CAI8041511.1 | SOLUBLE NSF ATTACHMENT PROTEIN SNAP |
| CAI8041510.1 | SOLUBLE NSF ATTACHMENT PROTEIN SNAP |
| CAI8041515.1 | - |
| CAI8041514.1 | - |
| CAI8041513.1 | |
| CAI8041516.1 | - |
| CAI8041519.1 | TRANSMEMBRANE PROTEIN 144 |
| CAI8041518.1 | TRANSMEMBRANE PROTEIN 144 |
| CAI8041517.1 | TRANSMEMBRANE PROTEIN 144 |
| CAI8041521.1 | TRANSMEMBRANE PROTEIN 144 |
