Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041520.1 | TRANSMEMBRANE PROTEIN 144 |
| CAI8041522.1 | TRANSMEMBRANE PROTEIN 144 |
| CAI8041523.1 | TRANSMEMBRANE PROTEIN 144 |
| CAI8041528.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041526.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041527.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041525.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041524.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041530.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041529.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041531.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041532.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041533.1 | |
| CAI8041534.1 | |
| CAI8041537.1 | ORGANIC SOLUTE TRANSPORTER-RELATED |
| CAI8041536.1 | ORGANIC SOLUTE TRANSPORTER-RELATED |
| CAI8041535.1 | |
| CAI8041538.1 | |
| CAI8041539.1 | ORGANIC SOLUTE TRANSPORTER-RELATED |
| CAI8041540.1 | ORGANIC SOLUTE TRANSPORTER-RELATED |
| CAI8041541.1 | |
| CAI8041542.1 | CYSTEINE DESULFURASE |
| CAI8041543.1 | SULFURTRANSFERASE-RELATED |
| CAI8041544.1 | SULFURTRANSFERASE-RELATED |
| CAI8041545.1 | SULFURTRANSFERASE-RELATED |
| CAI8041546.1 | LD33804P |
| CAI8041547.1 | |
| CAI8041549.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8041550.1 | CENTROMERE PROTEIN E |
| CAI8041548.1 | CENTROMERE PROTEIN E |
| CAI8041551.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8041552.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8041553.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8041554.1 | |
| CAI8041555.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 189 |
| CAI8041556.1 | TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT |
| CAI8041557.1 | FI21225P1 |
| CAI8041558.1 | FI21225P1 |
| CAI8041559.1 | |
| CAI8041561.1 | |
| CAI8041560.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8041562.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8041563.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8041564.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| CAI8041565.1 | |
| CAI8041566.1 | |
| CAI8041567.1 | HYDROLASE C777.06C-RELATED-RELATED |
| CAI8041568.1 | 2-PHOSPHOSULFOLACTATE PHOSPHATASE-RELATED |
| CAI8041569.1 | PYRUVATE CARBOXYLASE SUBUNIT A |
| CAI8041570.1 | PYRUVATE CARBOXYLASE SUBUNIT A |
