Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041771.1 | |
| CAI8041774.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| CAI8041773.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| CAI8041772.1 | |
| CAI8041775.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| CAI8041776.1 | |
| CAI8041777.1 | |
| CAI8041779.1 | |
| CAI8041778.1 | |
| CAI8041780.1 | MOLTING PROTEIN MLT-4 |
| CAI8041781.1 | CONDENSIN |
| CAI8041782.1 | CONDENSIN |
| CAI8041783.1 | CONDENSIN |
| CAI8041784.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8041786.1 | HOMOSERINE DEHYDROGENASE |
| CAI8041785.1 | HOMOSERINE DEHYDROGENASE |
| CAI8041787.1 | |
| CAI8041788.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8041790.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8041789.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8041791.1 | |
| CAI8041793.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8041792.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8041794.1 | D-AMINOPEPTIDASE |
| CAI8041795.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8041796.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8041797.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8041798.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8041799.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
| CAI8041801.1 | TRANSAMIDASE |
| CAI8041800.1 | TRANSAMIDASE |
| CAI8041802.1 | TRANSAMIDASE |
| CAI8041803.1 | TRANSAMIDASE |
| CAI8041804.1 | NADPH NITROREDUCTASE |
| CAI8041805.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8041806.1 | ANAEROBIC MAGNESIUM-PROTOPORPHYRIN IX MONOMETHYL ESTER CYCLASE-RELATED |
| CAI8041807.1 | MEMBRANE PROTEIN-RELATED |
| CAI8041808.1 | |
| CAI8041809.1 | 50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC |
| CAI8041810.1 | RIBOSOMAL PROTEIN L27 |
| CAI8041811.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8041812.1 | DEGV DOMAIN-CONTAINING PROTEIN DR_1986-RELATED |
| CAI8041813.1 | DEGV DOMAIN-CONTAINING PROTEIN DR_1986-RELATED |
| CAI8041814.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8041815.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8041816.1 | REGULATOR OF RPOS |
| CAI8041817.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8041818.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8041819.1 | METHIONINE SYNTHASE |
| CAI8041820.1 | UVRABC SYSTEM PROTEIN B |
