Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041971.1 | D-AMINOPEPTIDASE |
| CAI8041972.1 | |
| CAI8041973.1 | |
| CAI8041974.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8041975.1 | UDP-N-ACETYL-2-AMINO-2-DEOXY-D-GLUCURONATE OXIDASE |
| CAI8041977.1 | |
| CAI8041976.1 | |
| CAI8041978.1 | AMIDOHYDROLASE |
| CAI8041979.1 | HYPOTHETICAL DIHYDROXYACID DEHYDRATASE (EUROFUNG)-RELATED |
| CAI8041980.1 | HYPOTHETICAL DIHYDROXYACID DEHYDRATASE (EUROFUNG)-RELATED |
| CAI8041981.1 | HYPOTHETICAL DIHYDROXYACID DEHYDRATASE (EUROFUNG)-RELATED |
| CAI8041982.1 | BCDNA.GH03377 |
| CAI8041983.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 |
| CAI8041984.1 | |
| CAI8041985.1 | BCDNA.GH03377 |
| CAI8041986.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8041987.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8041988.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8041989.1 | MEMBRANE-ASSOCIATED PROTEIN VIPP1, CHLOROPLASTIC |
| CAI8041990.1 | |
| CAI8041991.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8041992.1 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
| CAI8041993.1 | |
| CAI8041994.1 | |
| CAI8041995.1 | THREONINE-TRNA LIGASE |
| CAI8041996.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8041997.1 | |
| CAI8041998.1 | PKSB |
| CAI8041999.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8042000.1 | |
| CAI8042001.1 | BCDNA.GH03377 |
| CAI8042002.1 | TAUTOMERASE YOLI-RELATED |
| CAI8042004.1 | METHIONINE AMINOPEPTIDASE |
| CAI8042003.1 | METHIONINE AMINOPEPTIDASE |
| CAI8042005.1 | 3-DEHYDRO-SCYLLO-INOSOSE HYDROLASE |
| CAI8042006.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8042007.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8042008.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8042009.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8042011.1 | ALANINE RACEMASE |
| CAI8042010.1 | ALANINE RACEMASE |
| CAI8042012.1 | EXOSOME COMPLEX COMPONENT |
| CAI8042013.1 | |
| CAI8042014.1 | |
| CAI8042015.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8042016.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8042017.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8042018.1 | |
| CAI8042019.1 | PHOSPHOSERINE PHOSPHATASE |
| CAI8042022.1 |
