Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042221.1 | |
| CAI8042222.1 | |
| CAI8042223.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI8042224.1 | BLR3430 PROTEIN |
| CAI8042225.1 | ACYL-COA SYNTHETASE |
| CAI8042226.1 | NITROGEN REGULATORY PROTEIN P-II |
| CAI8042227.1 | |
| CAI8042229.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8042228.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8042230.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8042231.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8042232.1 | |
| CAI8042233.1 | GLYCERATE KINASE |
| CAI8042234.1 | |
| CAI8042236.1 | UNCHARACTERIZED PROTEIN YKGE |
| CAI8042235.1 | UNCHARACTERIZED PROTEIN YKGE |
| CAI8042239.1 | GEO12009P1 |
| CAI8042238.1 | GEO12009P1 |
| CAI8042237.1 | GEO12009P1 |
| CAI8042241.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8042240.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8042242.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8042243.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC |
| CAI8042244.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA |
| CAI8042245.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8042246.1 | |
| CAI8042247.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8042248.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8042249.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8042251.1 | |
| CAI8042250.1 | |
| CAI8042252.1 | CYTOKINE RECEPTOR |
| CAI8042253.1 | CYTOKINE RECEPTOR |
| CAI8042254.1 | |
| CAI8042255.1 | 7-ALPHA-HYDROXYSTEROID DEHYDROGENASE |
| CAI8042256.1 | 23S RRNA (GUANOSINE-2'-O-)-METHYLTRANSFERASE RLMB |
| CAI8042257.1 | 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC |
| CAI8042259.1 | METHYLMALONYL-COA MUTASE |
| CAI8042258.1 | METHYLMALONYL-COA MUTASE |
| CAI8042260.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8042261.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8042262.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8042263.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8042264.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8042265.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8042266.1 | ATP7, ISOFORM B |
| CAI8042267.1 | |
| CAI8042268.1 | |
| CAI8042269.1 | |
| CAI8042270.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
