Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042374.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8042376.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8042377.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8042375.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8042378.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8042372.1 | FIBRILLIN-RELATED |
| CAI8042373.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8042371.1 | FIBRILLIN-RELATED |
| CAI8042379.1 | |
| CAI8042384.1 | ATP7, ISOFORM B |
| CAI8042385.1 | ATP7, ISOFORM B |
| CAI8042383.1 | ATP7, ISOFORM B |
| CAI8042382.1 | ATP7, ISOFORM B |
| CAI8042381.1 | ATP7, ISOFORM B |
| CAI8042380.1 | ATP7, ISOFORM B |
| CAI8042386.1 | TRANSCRIPTIONAL DUAL REGULATOR HCAR-RELATED |
| CAI8042387.1 | CATALASE |
| CAI8042388.1 | CATALASE |
| CAI8042389.1 | CONSERVED PROTEIN, WITH A WEAK D-GALACTARATE DEHYDRATASE/ALTRONATE HYDROLASE DOMAIN |
| CAI8042390.1 | |
| CAI8042391.1 | |
| CAI8042398.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042395.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042399.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042396.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042394.1 | |
| CAI8042397.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042393.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042392.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042401.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042400.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042402.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042404.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042403.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8042406.1 | |
| CAI8042405.1 | |
| CAI8042407.1 | |
| CAI8042411.1 | RAI16 PROTEIN-RELATED |
| CAI8042409.1 | RAI16 PROTEIN-RELATED |
| CAI8042408.1 | |
| CAI8042410.1 | RAI16 PROTEIN-RELATED |
| CAI8042412.1 | RAI16 PROTEIN-RELATED |
| CAI8042413.1 | RAI16 PROTEIN-RELATED |
| CAI8042414.1 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
| CAI8042415.1 | |
| CAI8042417.1 | |
| CAI8042416.1 | |
| CAI8042420.1 | FIBRILLIN-RELATED |
| CAI8042419.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8042418.1 | LAMININ G-LIKE DOMAIN-CONTAINING PROTEIN |
