Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042421.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8042422.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8042423.1 | |
| CAI8042425.1 | |
| CAI8042424.1 | |
| CAI8042428.1 | RESISTANCE PROTEIN MDTM, PUTATIVE-RELATED-RELATED |
| CAI8042427.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI8042426.1 | RESISTANCE PROTEIN MDTM, PUTATIVE-RELATED-RELATED |
| CAI8042429.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI8042430.1 | |
| CAI8042431.1 | FRIZZLED |
| CAI8042433.1 | FRIZZLED |
| CAI8042432.1 | |
| CAI8042434.1 | FRIZZLED |
| CAI8042435.1 | |
| CAI8042441.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8042439.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8042437.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8042438.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8042440.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8042436.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8042442.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8042443.1 | UNCHARACTERIZED |
| CAI8042444.1 | UNCHARACTERIZED |
| CAI8042445.1 | COLLAGEN ALPHA |
| CAI8042446.1 | |
| CAI8042447.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042453.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042448.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042452.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042449.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042451.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042450.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042454.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042455.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042456.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042457.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| CAI8042458.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042465.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042464.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042463.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042461.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042462.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042460.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042459.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042467.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042468.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042466.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042472.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042471.1 | DOPAMINE BETA HYDROXYLASE RELATED |
