Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042271.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
| CAI8042272.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8042273.1 | |
| CAI8042274.1 | |
| CAI8042275.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI8042276.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8042277.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8042278.1 | FUMARATE REDUCTASE |
| CAI8042279.1 | 7-CYANO-7-DEAZAGUANINE SYNTHASE |
| CAI8042280.1 | PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE |
| CAI8042281.1 | NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE |
| CAI8042283.1 | DYNEIN ASSEMBLY FACTOR 5, AXONEMAL |
| CAI8042282.1 | DYNEIN ASSEMBLY FACTOR 5, AXONEMAL |
| CAI8042286.1 | |
| CAI8042285.1 | |
| CAI8042284.1 | |
| CAI8042287.1 | DYNEIN ASSEMBLY FACTOR 5, AXONEMAL |
| CAI8042288.1 | |
| CAI8042290.1 | |
| CAI8042289.1 | |
| CAI8042291.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8042294.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8042293.1 | ANKYRIN REPEAT PROTEIN |
| CAI8042292.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8042295.1 | |
| CAI8042296.1 | SLL0198 PROTEIN-RELATED |
| CAI8042297.1 | BCDNA.GH03377 |
| CAI8042298.1 | LIPOYL SYNTHASE |
| CAI8042299.1 | GUANYLATE KINASE-RELATED |
| CAI8042302.1 | AROM/DEHYDROQUINATE SYNTHASE |
| CAI8042301.1 | AROM/DEHYDROQUINATE SYNTHASE |
| CAI8042300.1 | AROM/DEHYDROQUINATE SYNTHASE |
| CAI8042303.1 | PREPHENATE DEHYDROGENASE |
| CAI8042306.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8042305.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8042304.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8042307.1 | |
| CAI8042308.1 | |
| CAI8042309.1 | |
| CAI8042310.1 | LIPOPROTEIN-RELATED |
| CAI8042316.1 | ANKYRIN REPEAT CONTAINING |
| CAI8042314.1 | ANKYRIN REPEAT CONTAINING |
| CAI8042313.1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8042312.1 | |
| CAI8042311.1 | ANKYRIN REPEAT CONTAINING |
| CAI8042315.1 | |
| CAI8042317.1 | |
| CAI8042318.1 | |
| CAI8042319.1 | |
| CAI8042320.1 |
