Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042721.1 | HOMOACONITASE, MITOCHONDRIAL-RELATED |
| CAI8042722.1 | 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED |
| CAI8042725.1 | RIBOSOMAL PROTEIN S9 |
| CAI8042726.1 | RIBOSOMAL PROTEIN S9 |
| CAI8042724.1 | RIBOSOMAL PROTEIN S9 |
| CAI8042723.1 | RIBOSOMAL PROTEIN S9 |
| CAI8042727.1 | RIBOSOMAL PROTEIN L13 |
| CAI8042728.1 | |
| CAI8042729.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8042730.1 | RIBOSOME MATURATION PROTEIN SBDS |
| CAI8042731.1 | PNAS-3 RELATED |
| CAI8042732.1 | EXOSOME COMPLEX COMPONENT |
| CAI8042733.1 | EXOSOME COMPLEX COMPONENT |
| CAI8042734.1 | EXOSOME COMPLEX COMPONENT |
| CAI8042736.1 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN |
| CAI8042735.1 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN |
| CAI8042737.1 | 60S RIBOSOMAL PROTEIN L37A |
| CAI8042738.1 | PREFOLDIN SUBUNIT 1-RELATED |
| CAI8042739.1 | NAD KINASE |
| CAI8042740.1 | NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] |
| CAI8042741.1 | QUINOLINATE SYNTHETASE A |
| CAI8042742.1 | L-ASPARTATE DEHYDROGENASE-RELATED |
| CAI8042743.1 | COMPONENT OF ATP-DEPENDENT DSDNA EXONUCLEASE |
| CAI8042744.1 | |
| CAI8042745.1 | PBS LYASE HEAT-LIKE PROTEIN |
| CAI8042747.1 | RIBOSOMAL PROTEIN L15 |
| CAI8042746.1 | RIBOSOMAL PROTEIN L15 |
| CAI8042748.1 | |
| CAI8042752.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8042751.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8042750.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8042749.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8042753.1 | |
| CAI8042754.1 | ASPARTATE AMMONIA-LYASE |
| CAI8042755.1 | RADICAL SAM PROTEINS |
| CAI8042756.1 | 60S RIBOSOMAL PROTEIN L31 |
| CAI8042757.1 | RIBOSOMAL PROTEIN L39E |
| CAI8042758.1 | METHIONINE SYNTHASE |
| CAI8042759.1 | METHIONINE SYNTHASE |
| CAI8042760.1 | TAURINE IMPORT ATP-BINDING PROTEIN-RELATED |
| CAI8042761.1 | |
| CAI8042762.1 | BILIVERDIN REDUCTASE A |
| CAI8042764.1 | ACYL-ACTIVATING ENZYME 17, PEROXISOMAL-RELATED |
| CAI8042763.1 | GLR1098 PROTEIN |
| CAI8042765.1 | ACYL-ACTIVATING ENZYME 17, PEROXISOMAL-RELATED |
| CAI8042766.1 | |
| CAI8042767.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8042768.1 | |
| CAI8042769.1 | PHYTANOYL-COA DIOXYGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_2G15850) |
| CAI8042770.1 |
