Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042871.1 | |
| CAI8042872.1 | |
| CAI8042873.1 | ELECTRON TRANSPORT PROTEIN |
| CAI8042874.1 | POLYPHOSPHATE KINASE |
| CAI8042875.1 | POLYPHOSPHATE KINASE |
| CAI8042876.1 | |
| CAI8042877.1 | METHIONINE SULFOXIDE REDUCTASE |
| CAI8042878.1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL |
| CAI8042879.1 | ADENOSYLHOMOCYSTEINASE |
| CAI8042880.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8042881.1 | ABC TRANSPORTER, ATP-BINDING PROTEIN |
| CAI8042882.1 | ABC TRANSPORTER, ATP-BINDING PROTEIN |
| CAI8042883.1 | HOMOACONITASE, MITOCHONDRIAL-RELATED |
| CAI8042884.1 | 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED |
| CAI8042885.1 | |
| CAI8042888.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8042887.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8042886.1 | |
| CAI8042889.1 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
| CAI8042890.1 | TITIN |
| CAI8042891.1 | BETA-GALACTOSIDASE RELATED |
| CAI8042892.1 | |
| CAI8042893.1 | |
| CAI8042894.1 | PROTEIN CBG12474 |
| CAI8042895.1 | COPPER HOMEOSTASIS PROTEIN CUTC |
| CAI8042896.1 | PROTEIN CBG12474 |
| CAI8042897.1 | PROTEIN CBG12474 |
| CAI8042898.1 | |
| CAI8042899.1 | |
| CAI8042900.1 | ABC TRANSPORTER PERMEASE PROTEIN MG189-RELATED-RELATED |
| CAI8042901.1 | |
| CAI8042902.1 | |
| CAI8042903.1 | TRANSPOSASE |
| CAI8042904.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8042905.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8042906.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8042908.1 | FLAVIN PRENYLTRANSFERASE |
| CAI8042907.1 | FLAVIN PRENYLTRANSFERASE |
| CAI8042909.1 | FLAVIN PRENYLTRANSFERASE |
| CAI8042910.1 | METHYLTRANSFERASE |
| CAI8042911.1 | |
| CAI8042912.1 | LD18447P |
| CAI8042913.1 | HEMK METHYLTRANSFERASE |
| CAI8042914.1 | NHL REPEAT-CONTAINING PROTEIN 2 |
| CAI8042915.1 | |
| CAI8042916.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8042917.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8042918.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8042919.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8042920.1 | DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER |
