Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043021.1 | |
| CAI8043022.1 | 30S RIBOSOMAL PROTEIN S16 |
| CAI8043023.1 | 30S RIBOSOMAL PROTEIN S16 |
| CAI8043024.1 | UPF0109 PROTEIN SCO5592 |
| CAI8043025.1 | TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE |
| CAI8043026.1 | RIBOSOMAL PROTEIN L19 |
| CAI8043027.1 | UPF0102 PROTEIN YRAN |
| CAI8043028.1 | |
| CAI8043029.1 | ACYL CARRIER PROTEIN |
| CAI8043030.1 | RIBONUCLEASE III |
| CAI8043031.1 | CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL |
| CAI8043032.1 | THIAMINE PYROPHOSPHOKINASE |
| CAI8043033.1 | CHORISMATE MUTASE |
| CAI8043034.1 | PUTATIVE-RELATED |
| CAI8043035.1 | UNCHARACTERIZED |
| CAI8043036.1 | |
| CAI8043037.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8043038.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8043039.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8043041.1 | |
| CAI8043040.1 | |
| CAI8043042.1 | |
| CAI8043043.1 | DNA REPAIR PROTEIN RADC |
| CAI8043044.1 | DNA REPAIR PROTEIN RADC |
| CAI8043045.1 | DNA REPAIR PROTEIN RADC |
| CAI8043046.1 | DNA REPAIR PROTEIN RADC |
| CAI8043047.1 | BLR5956 PROTEIN |
| CAI8043048.1 | BLR5956 PROTEIN |
| CAI8043049.1 | FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC |
| CAI8043050.1 | PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU |
| CAI8043051.1 | PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU |
| CAI8043053.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8043052.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8043054.1 | PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PSTA-RELATED |
| CAI8043055.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8043056.1 | HYDROLASE, HALOACID DELAHOGENASE-RELATED |
| CAI8043057.1 | METHYLESTERASE FAMILY MEMBER |
| CAI8043058.1 | NAD-DEPENDENT ALCOHOL DEHYDROGENASE |
| CAI8043059.1 | INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE |
| CAI8043060.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8043061.1 | |
| CAI8043062.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER |
| CAI8043063.1 | MEMBRANE PROTEIN INSERTION EFFICIENCY FACTOR-RELATED |
| CAI8043064.1 | MEMBRANE PROTEIN INSERTION EFFICIENCY FACTOR-RELATED |
| CAI8043065.1 | CELL SURFACE PROTEIN |
| CAI8043066.1 | |
| CAI8043067.1 | PROTEIN JAG |
| CAI8043068.1 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
| CAI8043069.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| CAI8043070.1 | BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH |
