Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042971.1 | ES-2 PROTEIN - RELATED |
| CAI8042973.1 | LEUCINE RICH REPEAT PROTEIN |
| CAI8042972.1 | |
| CAI8042974.1 | |
| CAI8042976.1 | |
| CAI8042975.1 | |
| CAI8042977.1 | |
| CAI8042983.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8042981.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8042982.1 | CONTACTIN 5 |
| CAI8042980.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8042979.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8042978.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8042984.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8042985.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8042988.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8042987.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8042986.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8042989.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8042990.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| CAI8042991.1 | MUCIN 4-RELATED |
| CAI8042992.1 | CONTACTIN 5 |
| CAI8042993.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8042994.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8042995.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8042996.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8042997.1 | |
| CAI8042998.1 | |
| CAI8043001.1 | UNCHARACTERIZED |
| CAI8043000.1 | UNCHARACTERIZED |
| CAI8043002.1 | UNCHARACTERIZED |
| CAI8042999.1 | UNCHARACTERIZED |
| CAI8043003.1 | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN |
| CAI8043004.1 | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN |
| CAI8043005.1 | |
| CAI8043006.1 | |
| CAI8043013.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8043012.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8043011.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8043010.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8043009.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8043008.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8043007.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8043014.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8043015.1 | METALLOPROTEASE M41 FTSH |
| CAI8043016.1 | METALLOPROTEASE M41 FTSH |
| CAI8043017.1 | |
| CAI8043018.1 | |
| CAI8043019.1 | TAIL-SPECIFIC PROTEASE |
| CAI8043020.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
