Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042771.1 | OXIDOREDUCTASES |
| CAI8042772.1 | GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 |
| CAI8042773.1 | TRNA/RRNA METHYLTRANSFERASE |
| CAI8042774.1 | |
| CAI8042775.1 | |
| CAI8042776.1 | |
| CAI8042777.1 | TPR REPEAT-CONTAINING PROTEIN PA4667 |
| CAI8042779.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8042782.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8042780.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8042781.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8042783.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8042778.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8042784.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8042785.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8042786.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8042787.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8042788.1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
| CAI8042789.1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
| CAI8042790.1 | |
| CAI8042791.1 | GTPASE DER |
| CAI8042792.1 | GTPASE DER |
| CAI8042793.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8042794.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8042795.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8042796.1 | XANTHINE/URACIL PERMEASE C887.17-RELATED |
| CAI8042797.1 | XANTHINE/URACIL PERMEASE C887.17-RELATED |
| CAI8042798.1 | |
| CAI8042799.1 | EXPRESSED PROTEIN |
| CAI8042800.1 | AMINO ACID AMINOTRANSFERASE |
| CAI8042801.1 | IDURONATE 2-SULFATASE |
| CAI8042808.1 | ENDONUCLEASE V |
| CAI8042807.1 | ENDONUCLEASE V |
| CAI8042806.1 | ENDONUCLEASE V |
| CAI8042805.1 | ENDONUCLEASE V |
| CAI8042804.1 | ENDONUCLEASE V |
| CAI8042803.1 | ENDONUCLEASE V |
| CAI8042802.1 | ENDONUCLEASE V |
| CAI8042809.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI8042810.1 | |
| CAI8042811.1 | |
| CAI8042812.1 | |
| CAI8042813.1 | EPIMERASE-RELATED |
| CAI8042814.1 | ALPHA-IPM SYNTHASE/HOMOCITRATE SYNTHASE |
| CAI8042815.1 | AMINOMETHYLTRANSFERASE |
| CAI8042818.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8042816.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI8042817.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI8042819.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8042820.1 | THIOREDOXIN PEROXIDASE |
