Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042821.1 | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE |
| CAI8042824.1 | CITRATE SYNTHASE |
| CAI8042823.1 | CITRATE SYNTHASE |
| CAI8042822.1 | CITRATE SYNTHASE |
| CAI8042825.1 | |
| CAI8042826.1 | |
| CAI8042827.1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8042828.1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8042829.1 | ALKANESULFONATE MONOOXYGENASE-RELATED |
| CAI8042830.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI8042831.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI8042832.1 | L-ORNITHINE N(5)-MONOOXYGENASE-RELATED |
| CAI8042833.1 | L-ORNITHINE N(5)-MONOOXYGENASE-RELATED |
| CAI8042834.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8042835.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8042836.1 | TRANSPOSASE INSF FOR INSERTION SEQUENCE IS3B-RELATED |
| CAI8042837.1 | TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1081 |
| CAI8042838.1 | |
| CAI8042845.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8042843.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8042844.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8042847.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8042846.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8042848.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8042842.1 | JITTERBUG, ISOFORM N |
| CAI8042849.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8042850.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8042839.1 | |
| CAI8042840.1 | |
| CAI8042841.1 | |
| CAI8042852.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8042851.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8042853.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8042854.1 | QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) |
| CAI8042855.1 | INNER MEMBRANE ABC TRANSPORTER |
| CAI8042856.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8042857.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8042858.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8042859.1 | SIALIDASE |
| CAI8042860.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8042861.1 | |
| CAI8042862.1 | |
| CAI8042863.1 | ARABINOSE-BINDING PROTEIN-RELATED |
| CAI8042864.1 | ABC TRANSPORTER PERMEASE PROTEIN MG189-RELATED-RELATED |
| CAI8042867.1 | |
| CAI8042866.1 | |
| CAI8042868.1 | |
| CAI8042865.1 | |
| CAI8042869.1 | |
| CAI8042870.1 |
