Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043221.1 | RIBONUCLEASE VAPC3 |
| CAI8043222.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8043223.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8043224.1 | |
| CAI8043225.1 | |
| CAI8043226.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8043227.1 | |
| CAI8043228.1 | CCAAT DISPLACEMENT PROTEIN-RELATED |
| CAI8043229.1 | RPA-INTERACTING PROTEIN RPAIN |
| CAI8043231.1 | RPA-INTERACTING PROTEIN RPAIN |
| CAI8043230.1 | RPA-INTERACTING PROTEIN RPAIN |
| CAI8043234.1 | ACYL-COA DEHYDROGENASE |
| CAI8043233.1 | ACYL-COA DEHYDROGENASE |
| CAI8043232.1 | ACYL-COA DEHYDROGENASE |
| CAI8043236.1 | IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB |
| CAI8043235.1 | IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB |
| CAI8043237.1 | |
| CAI8043238.1 | |
| CAI8043239.1 | |
| CAI8043240.1 | |
| CAI8043242.1 | TRANSDUCIN BETA-LIKE 3 |
| CAI8043241.1 | TRANSDUCIN BETA-LIKE 3 |
| CAI8043243.1 | SQUALENE MONOOXYGENASE |
| CAI8043244.1 | |
| CAI8043246.1 | CELL DIVISION PROTEIN KINASE |
| CAI8043245.1 | CELL DIVISION PROTEIN KINASE |
| CAI8043249.1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
| CAI8043251.1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
| CAI8043247.1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
| CAI8043248.1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
| CAI8043250.1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
| CAI8043252.1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
| CAI8043253.1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
| CAI8043254.1 | MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB |
| CAI8043255.1 | 50S RIBOSOMAL PROTEIN L34 |
| CAI8043256.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8043257.1 | NADPH NITROREDUCTASE |
| CAI8043258.1 | |
| CAI8043259.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8043260.1 | L-ASPARAGINASE |
| CAI8043261.1 | RESISTANCE PROTEIN MDTM, PUTATIVE-RELATED-RELATED |
| CAI8043262.1 | |
| CAI8043263.1 | |
| CAI8043264.1 | |
| CAI8043265.1 | - |
| CAI8043266.1 | ARSENITE METHYLTRANSFERASE |
| CAI8043267.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8043268.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8043269.1 | REGULATORY PROTEIN, FMDB FAMILY |
| CAI8043270.1 |
