Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043371.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8043372.1 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE |
| CAI8043373.1 | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED |
| CAI8043376.1 | |
| CAI8043375.1 | |
| CAI8043374.1 | |
| CAI8043377.1 | |
| CAI8043378.1 | |
| CAI8043379.1 | |
| CAI8043380.1 | |
| CAI8043382.1 | UNCHARACTERIZED |
| CAI8043381.1 | UNCHARACTERIZED |
| CAI8043383.1 | UNCHARACTERIZED |
| CAI8043384.1 | UNCHARACTERIZED |
| CAI8043385.1 | SYNAPTONEMAL COMPLEX PROTEIN-RELATED |
| CAI8043387.1 | |
| CAI8043386.1 | |
| CAI8043389.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8043388.1 | |
| CAI8043390.1 | GREB1-RELATED |
| CAI8043391.1 | GREB1-RELATED |
| CAI8043392.1 | GREB1-RELATED |
| CAI8043393.1 | |
| CAI8043394.1 | |
| CAI8043396.1 | |
| CAI8043395.1 | |
| CAI8043399.1 | |
| CAI8043398.1 | |
| CAI8043397.1 | ADDITIONAL SEX COMBS LIKE PROTEIN ASXL |
| CAI8043400.1 | |
| CAI8043402.1 | |
| CAI8043401.1 | |
| CAI8043404.1 | MRNA EXPORT FACTOR AND BUB3 |
| CAI8043403.1 | MRNA EXPORT FACTOR AND BUB3 |
| CAI8043408.1 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| CAI8043407.1 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| CAI8043406.1 | TYROSINE-PROTEIN KINASE |
| CAI8043405.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8043410.1 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| CAI8043409.1 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| CAI8043412.1 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| CAI8043411.1 | |
| CAI8043417.1 | PROTEIN FAM91A1 |
| CAI8043415.1 | PROTEIN FAM91A1 |
| CAI8043414.1 | PROTEIN FAM91A1 |
| CAI8043413.1 | PROTEIN FAM91A1 |
| CAI8043416.1 | PROTEIN FAM91A1 |
| CAI8043418.1 | PROTEIN FAM91A1 |
| CAI8043419.1 | CYTOCHROME C OXIDASE SUBUNIT 6C |
| CAI8043420.1 | NGD5/OSM-6/IFT52 |
