Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043421.1 | NGD5/OSM-6/IFT52 |
| CAI8043422.1 | NGD5/OSM-6/IFT52 |
| CAI8043423.1 | NGD5/OSM-6/IFT52 |
| CAI8043424.1 | NGD5/OSM-6/IFT52 |
| CAI8043425.1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| CAI8043426.1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| CAI8043427.1 | 60S RIBOSOMAL PROTEIN L4 |
| CAI8043428.1 | RRNA-PROCESSING PROTEIN EFG1 |
| CAI8043429.1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| CAI8043430.1 | HEPARAN SULFATE SULFOTRANSFERASE |
| CAI8043434.1 | CHLORIDE CHANNEL PROTEIN |
| CAI8043433.1 | CHLORIDE CHANNEL PROTEIN |
| CAI8043432.1 | CHLORIDE CHANNEL PROTEIN |
| CAI8043431.1 | CHLORIDE CHANNEL PROTEIN |
| CAI8043435.1 | CHLORIDE CHANNEL PROTEIN |
| CAI8043437.1 | CHLORIDE CHANNEL PROTEIN |
| CAI8043436.1 | CHLORIDE CHANNEL PROTEIN |
| CAI8043438.1 | CHLORIDE CHANNEL PROTEIN |
| CAI8043439.1 | CHLORIDE CHANNEL PROTEIN |
| CAI8043440.1 | GDP-L-FUCOSE SYNTHASE |
| CAI8043441.1 | GDP-L-FUCOSE SYNTHASE |
| CAI8043442.1 | GDP-L-FUCOSE SYNTHASE |
| CAI8043443.1 | DEP DOMAIN-CONTAINING |
| CAI8043445.1 | |
| CAI8043444.1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| CAI8043446.1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| CAI8043449.1 | GLUCOSAMINE-6-PHOSPHATE ISOMERASE |
| CAI8043447.1 | GLUCOSAMINE-6-PHOSPHATE ISOMERASE |
| CAI8043448.1 | GLUCOSAMINE-6-PHOSPHATE ISOMERASE |
| CAI8043452.1 | ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED |
| CAI8043451.1 | ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED |
| CAI8043450.1 | ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED |
| CAI8043453.1 | ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED |
| CAI8043454.1 | ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED |
| CAI8043455.1 | ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED |
| CAI8043456.1 | RNA RECOGNITION RRM/RNP DOMAIN |
| CAI8043458.1 | AP-5 COMPLEX SUBUNIT BETA-1 |
| CAI8043457.1 | AP-5 COMPLEX SUBUNIT BETA-1 |
| CAI8043461.1 | AP-5 COMPLEX SUBUNIT BETA-1 |
| CAI8043460.1 | AP-5 COMPLEX SUBUNIT BETA-1 |
| CAI8043459.1 | AP-5 COMPLEX SUBUNIT BETA-1 |
| CAI8043462.1 | |
| CAI8043463.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 65 |
| CAI8043464.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 65 |
| CAI8043465.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 65 |
| CAI8043467.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8043466.1 | |
| CAI8043468.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8043470.1 | UNCHARACTERIZED |
| CAI8043469.1 | UNCHARACTERIZED |
