Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043571.1 | - |
| CAI8043572.1 | - |
| CAI8043573.1 | |
| CAI8043574.1 | TRANSCRIPTION FACTOR E2F |
| CAI8043575.1 | |
| CAI8043576.1 | POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN |
| CAI8043577.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8043580.1 | DIACYLGLYCEROL KINASE |
| CAI8043579.1 | DIACYLGLYCEROL KINASE |
| CAI8043578.1 | DIACYLGLYCEROL KINASE |
| CAI8043581.1 | |
| CAI8043583.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8043582.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8043584.1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8043585.1 | |
| CAI8043586.1 | LIPASE |
| CAI8043591.1 | BICD FAMILY-LIKE CARGO ADAPTER |
| CAI8043589.1 | BICD FAMILY-LIKE CARGO ADAPTER |
| CAI8043590.1 | BICD FAMILY-LIKE CARGO ADAPTER |
| CAI8043587.1 | |
| CAI8043588.1 | BICD FAMILY-LIKE CARGO ADAPTER |
| CAI8043592.1 | |
| CAI8043593.1 | DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER |
| CAI8043596.1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| CAI8043598.1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| CAI8043597.1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| CAI8043595.1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| CAI8043594.1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| CAI8043599.1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| CAI8043600.1 | |
| CAI8043601.1 | |
| CAI8043604.1 | TRANSMEMBRANE PROTEIN 237 |
| CAI8043606.1 | TRANSMEMBRANE PROTEIN 237 |
| CAI8043605.1 | |
| CAI8043603.1 | |
| CAI8043602.1 | |
| CAI8043607.1 | |
| CAI8043608.1 | |
| CAI8043610.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 |
| CAI8043609.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 |
| CAI8043611.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 |
| CAI8043612.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 |
| CAI8043613.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 |
| CAI8043614.1 | |
| CAI8043615.1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| CAI8043616.1 | VILLIN |
| CAI8043617.1 | |
| CAI8043618.1 | |
| CAI8043619.1 | |
| CAI8043620.1 |
