Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043721.1 | |
| CAI8043722.1 | |
| CAI8043723.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8043724.1 | |
| CAI8043725.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8043726.1 | |
| CAI8043727.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8043728.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8043729.1 | |
| CAI8043730.1 | |
| CAI8043731.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8043732.1 | |
| CAI8043733.1 | |
| CAI8043734.1 | |
| CAI8043735.1 | |
| CAI8043736.1 | TRANSLATION FACTOR |
| CAI8043737.1 | SULFATE ADENYLYLTRANSFERASE SUBUNIT 2 |
| CAI8043740.1 | 5'-ADENYLYLSULFATE REDUCTASE 3, CHLOROPLASTIC |
| CAI8043739.1 | 5'-ADENYLYLSULFATE REDUCTASE 3, CHLOROPLASTIC |
| CAI8043738.1 | 5'-ADENYLYLSULFATE REDUCTASE 3, CHLOROPLASTIC |
| CAI8043741.1 | |
| CAI8043742.1 | |
| CAI8043743.1 | BLL4140 PROTEIN |
| CAI8043744.1 | ABC TRANSPORTER PERMEASE PROTEIN MG189-RELATED-RELATED |
| CAI8043745.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8043746.1 | |
| CAI8043747.1 | |
| CAI8043751.1 | |
| CAI8043750.1 | |
| CAI8043749.1 | |
| CAI8043748.1 | |
| CAI8043752.1 | |
| CAI8043753.1 | |
| CAI8043754.1 | |
| CAI8043762.1 | IMPORTIN BETA |
| CAI8043758.1 | IMPORTIN BETA |
| CAI8043757.1 | |
| CAI8043759.1 | IMPORTIN BETA |
| CAI8043760.1 | |
| CAI8043761.1 | |
| CAI8043763.1 | |
| CAI8043755.1 | |
| CAI8043756.1 | |
| CAI8043764.1 | |
| CAI8043765.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8043766.1 | |
| CAI8043767.1 | |
| CAI8043768.1 | TYPE-1 RESTRICTION ENZYME ECOKI SPECIFICITY PROTEIN |
| CAI8043769.1 | - |
| CAI8043770.1 | - |
