Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043771.1 | |
| CAI8043772.1 | HELICASE SUPERFAMILY 1 AND 2 DOMAIN-CONTAINING PROTEIN |
| CAI8043773.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI8043774.1 | MODULATOR OF FTSH PROTEASE HFLC |
| CAI8043775.1 | DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) |
| CAI8043776.1 | MALATE SYNTHASE G |
| CAI8043777.1 | |
| CAI8043778.1 | |
| CAI8043779.1 | |
| CAI8043783.1 | |
| CAI8043782.1 | |
| CAI8043780.1 | |
| CAI8043781.1 | |
| CAI8043784.1 | |
| CAI8043785.1 | |
| CAI8043786.1 | |
| CAI8043787.1 | TRANSPOSON |
| CAI8043788.1 | GABA-B RECEPTOR |
| CAI8043789.1 | |
| CAI8043790.1 | |
| CAI8043791.1 | |
| CAI8043792.1 | RRP15-LIKE PROTEIN |
| CAI8043793.1 | |
| CAI8043794.1 | |
| CAI8043795.1 | |
| CAI8043801.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8043800.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8043799.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8043798.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8043797.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8043796.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8043802.1 | MEMBRANE PROTEIN INSERTION EFFICIENCY FACTOR-RELATED |
| CAI8043803.1 | |
| CAI8043804.1 | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE |
| CAI8043805.1 | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE |
| CAI8043806.1 | CHROMOSOME-PARTITIONING PROTEIN PARB-RELATED |
| CAI8043807.1 | CHROMOSOME-PARTITIONING PROTEIN PARB-RELATED |
| CAI8043808.1 | CHROMOSOME-PARTITIONING PROTEIN PARB-RELATED |
| CAI8043809.1 | CHROMOSOME-PARTITIONING PROTEIN PARB-RELATED |
| CAI8043810.1 | CHROMOSOME-PARTITIONING PROTEIN PARB-RELATED |
| CAI8043811.1 | CHROMOSOME-PARTITIONING PROTEIN PARB-RELATED |
| CAI8043812.1 | GEO12009P1 |
| CAI8043813.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8043814.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8043815.1 | CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL |
| CAI8043816.1 | |
| CAI8043817.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI8043818.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI8043819.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 |
| CAI8043820.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
