Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043920.1 | HEPARANASE |
| CAI8043919.1 | HEPARANASE |
| CAI8043923.1 | HEPARANASE |
| CAI8043924.1 | PROLINE OXIDASE |
| CAI8043925.1 | |
| CAI8043926.1 | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER |
| CAI8043927.1 | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER |
| CAI8043928.1 | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER |
| CAI8043929.1 | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER |
| CAI8043930.1 | |
| CAI8043932.1 | |
| CAI8043931.1 | |
| CAI8043933.1 | |
| CAI8043934.1 | PROTEIN CBG16327 |
| CAI8043935.1 | |
| CAI8043938.1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| CAI8043939.1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| CAI8043940.1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| CAI8043937.1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| CAI8043936.1 | |
| CAI8043941.1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| CAI8043942.1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| CAI8043943.1 | |
| CAI8043944.1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| CAI8043945.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8043947.1 | - |
| CAI8043946.1 | - |
| CAI8043948.1 | TRPL TRANSLOCATION DEFECT PROTEIN 14 |
| CAI8043951.1 | SUPPRESSION OF TUMORIGENICITY 7 |
| CAI8043949.1 | SUPPRESSION OF TUMORIGENICITY 7 |
| CAI8043950.1 | SUPPRESSION OF TUMORIGENICITY 7 |
| CAI8043953.1 | PROTEIN OF UNKNOWN FUNCTION DUF729 |
| CAI8043952.1 | PROTEIN OF UNKNOWN FUNCTION DUF729 |
| CAI8043955.1 | |
| CAI8043954.1 | |
| CAI8043956.1 | PROTEIN HGH1 HOMOLOG |
| CAI8043960.1 | - |
| CAI8043957.1 | - |
| CAI8043959.1 | - |
| CAI8043961.1 | - |
| CAI8043958.1 | - |
| CAI8043962.1 | |
| CAI8043967.1 | - |
| CAI8043965.1 | - |
| CAI8043964.1 | - |
| CAI8043963.1 | - |
| CAI8043968.1 | - |
| CAI8043969.1 | - |
| CAI8043966.1 | - |
| CAI8043970.1 | - |
