About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8044071.1THIAMINE PYROPHOSPHATE ENZYMES
CAI8044072.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8044073.1
CAI8044074.1RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I
CAI8044075.1RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I
CAI8044076.1METHIONINE--TRNA LIGASE
CAI8044077.1METHIONINE--TRNA LIGASE
CAI8044078.1GERANYLGERANYL PYROPHOSPHATE SYNTHASE
CAI8044079.1
CAI8044080.1SODIUM/POTASSIUM/CALCIUM EXCHANGER
CAI8044081.1CYSTEINYL-TRNA SYNTHETASE
CAI8044082.1PYRUVATE KINASE
CAI8044083.1
CAI8044086.1-
CAI8044085.1-
CAI8044084.1-
CAI8044087.1DC12-RELATED
CAI8044088.1MOXR FAMILY PROTEIN
CAI8044089.1
CAI8044090.1
CAI8044092.1
CAI8044091.1
CAI8044093.1MUCIN 4-RELATED
CAI8044094.1
CAI8044095.1
CAI8044096.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8044097.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
CAI8044098.1
CAI8044100.1SCAVENGER RECEPTOR DOMAIN-CONTAINING
CAI8044099.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8044101.1
CAI8044102.1THIAMINE PYROPHOSPHATE ENZYMES
CAI8044103.1ACETOLACTATE SYNTHASE SMALL SUBUNIT
CAI8044104.1KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL
CAI8044105.1KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL
CAI8044106.1KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL
CAI8044107.1HOMOCITRATE SYNTHASE-RELATED
CAI8044108.13-ISOPROPYLMALATE DEHYDROGENASE
CAI8044109.1PSEUDOURIDYLATE SYNTHASE
CAI8044110.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8044111.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8044112.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8044113.1
CAI8044114.1
CAI8044115.13-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED
CAI8044119.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8044118.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8044117.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8044116.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8044120.1PSEUDOURIDYLATE SYNTHASE
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