Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044121.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8044123.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8044122.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8044124.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8044125.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8044126.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| CAI8044127.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| CAI8044128.1 | FERREDOXIN-RELATED |
| CAI8044129.1 | PEPTIDASE T |
| CAI8044130.1 | |
| CAI8044131.1 | |
| CAI8044132.1 | |
| CAI8044133.1 | |
| CAI8044134.1 | |
| CAI8044135.1 | - |
| CAI8044136.1 | BLL0334 PROTEIN |
| CAI8044137.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8044138.1 | |
| CAI8044139.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI8044140.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI8044141.1 | |
| CAI8044142.1 | |
| CAI8044143.1 | H REPEAT-ASSOCIATED PREDICTED TRANSPOSASE |
| CAI8044144.1 | SLR1429 PROTEIN |
| CAI8044145.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI8044146.1 | ANTITOXIN HIGA-1 |
| CAI8044147.1 | |
| CAI8044152.1 | CCCH ZINGC FINGER |
| CAI8044148.1 | CCCH ZINGC FINGER |
| CAI8044149.1 | CCCH ZINGC FINGER |
| CAI8044150.1 | CCCH ZINGC FINGER |
| CAI8044151.1 | CCCH ZINGC FINGER |
| CAI8044153.1 | CCCH ZINGC FINGER |
| CAI8044154.1 | |
| CAI8044155.1 | CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL |
| CAI8044156.1 | SODIUM/HYDROGEN EXCHANGER |
| CAI8044157.1 | PROTEIN C8ORF37 |
| CAI8044158.1 | PROTEIN C8ORF37 |
| CAI8044163.1 | |
| CAI8044162.1 | |
| CAI8044161.1 | |
| CAI8044160.1 | |
| CAI8044159.1 | |
| CAI8044164.1 | |
| CAI8044165.1 | |
| CAI8044167.1 | |
| CAI8044166.1 | |
| CAI8044168.1 | |
| CAI8044169.1 | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED |
| CAI8044170.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
