Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043871.1 | |
| CAI8043872.1 | |
| CAI8043873.1 | |
| CAI8043874.1 | |
| CAI8043875.1 | |
| CAI8043876.1 | |
| CAI8043877.1 | |
| CAI8043878.1 | |
| CAI8043879.1 | |
| CAI8043880.1 | |
| CAI8043881.1 | HYDROPEROXIDE REDUCTASE |
| CAI8043882.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8043883.1 | |
| CAI8043884.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8043885.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8043886.1 | AP ENDONUCLEASE |
| CAI8043887.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8043888.1 | |
| CAI8043889.1 | |
| CAI8043890.1 | BETA-LACTAMASE-RELATED |
| CAI8043891.1 | CATABOLIC 3-DEHYDROQUINASE |
| CAI8043892.1 | DNA PRIMASE |
| CAI8043893.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8043894.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8043895.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8043896.1 | |
| CAI8043900.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8043899.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8043898.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8043897.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8043901.1 | TRANSAMIDASE |
| CAI8043902.1 | |
| CAI8043903.1 | TRANSAMIDASE |
| CAI8043904.1 | TRANSAMIDASE |
| CAI8043905.1 | |
| CAI8043906.1 | 6-PHOSPHOGLUCONOLACTONASE-RELATED |
| CAI8043907.1 | 6-PHOSPHOGLUCONOLACTONASE-RELATED |
| CAI8043908.1 | NEPHRIN |
| CAI8043909.1 | |
| CAI8043910.1 | TYROSINE-PROTEIN PHOSPHATASE-RELATED |
| CAI8043911.1 | |
| CAI8043912.1 | |
| CAI8043913.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI8043914.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI8043915.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8043916.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8043917.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8043918.1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1 |
| CAI8043922.1 | HEPARANASE |
| CAI8043921.1 | HEPARANASE |
