Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044021.1 | |
| CAI8044022.1 | |
| CAI8044023.1 | |
| CAI8044025.1 | SMARCE1 REGULATOR OF CHROMATIN |
| CAI8044024.1 | SMARCE1 REGULATOR OF CHROMATIN |
| CAI8044026.1 | SMARCE1 REGULATOR OF CHROMATIN |
| CAI8044028.1 | |
| CAI8044027.1 | |
| CAI8044029.1 | |
| CAI8044031.1 | DNA REPAIR PROTEIN RAD9 |
| CAI8044030.1 | DNA REPAIR PROTEIN RAD9 |
| CAI8044033.1 | DNA REPAIR PROTEIN RAD9 |
| CAI8044032.1 | DNA REPAIR PROTEIN RAD9 |
| CAI8044034.1 | DNA REPAIR PROTEIN RAD9 |
| CAI8044035.1 | DNA REPAIR PROTEIN RAD9 |
| CAI8044036.1 | UNCHARACTERIZED |
| CAI8044037.1 | UNCHARACTERIZED |
| CAI8044038.1 | |
| CAI8044039.1 | GEO07735P1-RELATED-RELATED |
| CAI8044040.1 | CARTILAGE ACIDIC PROTEIN 1 |
| CAI8044041.1 | |
| CAI8044042.1 | GLUTATHIONE HYDROLASE |
| CAI8044043.1 | |
| CAI8044044.1 | L-ASPARTATE DEHYDROGENASE-RELATED |
| CAI8044045.1 | HIGH-AFFINITY NITRATE TRANSPORTER 2.3 |
| CAI8044046.1 | FERREDOXIN-RELATED |
| CAI8044047.1 | NITRITE REDUCTASE (NADH) LARGE SUBUNIT |
| CAI8044048.1 | PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING |
| CAI8044049.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8044050.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8044051.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI8044052.1 | |
| CAI8044053.1 | |
| CAI8044054.1 | SLR1870 PROTEIN |
| CAI8044055.1 | TYPE III PANTOTHENATE KINASE |
| CAI8044056.1 | TYPE III PANTOTHENATE KINASE |
| CAI8044057.1 | TYPE III PANTOTHENATE KINASE |
| CAI8044058.1 | HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY |
| CAI8044059.1 | GLL3345 PROTEIN |
| CAI8044060.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8044061.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
| CAI8044062.1 | MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED |
| CAI8044063.1 | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8044064.1 | TRYPTOPHAN BIOSYNTHESIS PROTEIN |
| CAI8044065.1 | HISTIDINE TRIAD HIT PROTEIN |
| CAI8044066.1 | |
| CAI8044067.1 | |
| CAI8044068.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8044069.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8044070.1 | THIAMINE PYROPHOSPHATE ENZYMES |
