Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044172.1 | MYOTROPHIN |
| CAI8044171.1 | MYOTROPHIN |
| CAI8044175.1 | ORGANIC ANION TRANSPORTER |
| CAI8044174.1 | ORGANIC ANION TRANSPORTER |
| CAI8044173.1 | ORGANIC ANION TRANSPORTER |
| CAI8044176.1 | ORGANIC ANION TRANSPORTER |
| CAI8044177.1 | |
| CAI8044180.1 | MIDASIN-RELATED |
| CAI8044179.1 | MIDASIN-RELATED |
| CAI8044178.1 | MIDASIN-RELATED |
| CAI8044181.1 | MIDASIN-RELATED |
| CAI8044182.1 | MIDASIN-RELATED |
| CAI8044183.1 | MIDASIN-RELATED |
| CAI8044184.1 | MIDASIN-RELATED |
| CAI8044185.1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| CAI8044186.1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| CAI8044190.1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| CAI8044188.1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| CAI8044189.1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| CAI8044187.1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| CAI8044191.1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8044192.1 | PROTEIN FAM72A-RELATED |
| CAI8044193.1 | |
| CAI8044195.1 | TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 |
| CAI8044194.1 | |
| CAI8044196.1 | TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 |
| CAI8044198.1 | UNCHARACTERIZED |
| CAI8044199.1 | UNCHARACTERIZED |
| CAI8044197.1 | |
| CAI8044200.1 | UNCHARACTERIZED |
| CAI8044201.1 | NUCLEAR PROTEIN E3-3 |
| CAI8044202.1 | ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED |
| CAI8044203.1 | |
| CAI8044204.1 | AP ENDONUCLEASE |
| CAI8044205.1 | AP ENDONUCLEASE |
| CAI8044209.1 | LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN |
| CAI8044207.1 | LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN |
| CAI8044208.1 | LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN |
| CAI8044206.1 | LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN |
| CAI8044210.1 | PX SERINE/THREONINE KINASE PXK |
| CAI8044211.1 | PX SERINE/THREONINE KINASE PXK |
| CAI8044213.1 | PX SERINE/THREONINE KINASE PXK |
| CAI8044212.1 | |
| CAI8044216.1 | MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN |
| CAI8044217.1 | MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN |
| CAI8044215.1 | MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN |
| CAI8044214.1 | |
| CAI8044218.1 | |
| CAI8044219.1 | |
| CAI8044222.1 | SORTING NEXIN FAMILY MEMBER |
